Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31240
(733 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0086 - 5112095-5112185,5112487-5112599,5113325-5113431,511... 31 0.71
06_03_0243 + 18629793-18630047,18630362-18630442,18631911-186323... 31 0.94
07_03_0425 - 18070607-18070712,18071771-18072744 31 1.2
05_02_0099 - 6582498-6582725,6583148-6583235,6583437-6583830,658... 31 1.2
03_05_0373 + 23581812-23583293 26 1.6
09_02_0146 + 4953007-4953297,4954105-4954341,4954592-4954669,495... 30 2.2
02_04_0616 + 24416924-24418162 29 2.9
02_04_0352 + 22278514-22278721,22278871-22279136,22279228-22279833 29 2.9
03_05_0554 - 25551220-25551310,25551562-25551695,25552115-255522... 29 3.8
01_01_0244 - 2005152-2005649,2006186-2006254 29 3.8
07_03_0418 + 17979504-17980964 29 5.0
07_03_0415 + 17920383-17921843 29 5.0
01_01_0774 - 6004040-6004371,6004634-6005215,6005391-6005657,600... 29 5.0
07_03_1131 + 24190675-24190814,24190938-24191021,24191628-241917... 28 6.6
05_06_0209 - 26389902-26389928,26389981-26390161,26390265-263904... 28 8.8
03_02_0538 + 9299639-9300046,9300362-9300509,9300648-9300652,930... 28 8.8
02_03_0016 + 13962086-13962326,13962529-13962614,13962652-139627... 28 8.8
>10_02_0086 -
5112095-5112185,5112487-5112599,5113325-5113431,
5113782-5113860,5114000-5114089,5114628-5114882,
5117025-5117174,5117634-5117933
Length = 394
Score = 31.5 bits (68), Expect = 0.71
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -3
Query: 542 DSVTTAFVFPADDRLLQRWYREGQXRDIGSEGPDQRH 432
D T FVF ++RL Q WY + R IG++ + H
Sbjct: 11 DPEVTNFVFQQEERLFQMWYPDSFIRIIGTDSLIRTH 47
>06_03_0243 +
18629793-18630047,18630362-18630442,18631911-18632305,
18632471-18632926,18633156-18633247,18633528-18633683,
18635657-18636057
Length = 611
Score = 31.1 bits (67), Expect = 0.94
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = -1
Query: 352 RPLVDSLGGNGVAHVTSWPAPSKASTIPLPREL 254
R +V LGG G + PAP+ AST PLP L
Sbjct: 338 RAVVVLLGGRGPEPAAASPAPAAASTPPLPLSL 370
>07_03_0425 - 18070607-18070712,18071771-18072744
Length = 359
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +3
Query: 201 SARAYHVLCVFPIPSRSHNSLGKGIVEALLGAGHEVTW 314
+A A HVL VFP P++ H + LLGAG VT+
Sbjct: 4 AAAAAHVL-VFPFPAQGHINCMMHFATGLLGAGLHVTF 40
>05_02_0099 -
6582498-6582725,6583148-6583235,6583437-6583830,
6585855-6585990,6586413-6586931
Length = 454
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +1
Query: 601 VVQRLHNASLGNHHR*GAGRSPPYRCCSTTPQPPWAS 711
V +RLH+ L HHR + SPP P PP A+
Sbjct: 47 VSRRLHSLDLPKHHRRSSSSSPPPMPPPLPPPPPSAN 83
>03_05_0373 + 23581812-23583293
Length = 493
Score = 26.2 bits (55), Expect(2) = 1.6
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = +1
Query: 649 GAGRSPPYRC-CSTTPQPPWAS 711
G+ S P RC ST P+ PWA+
Sbjct: 59 GSAASSPSRCSASTPPKSPWAA 80
Score = 22.6 bits (46), Expect(2) = 1.6
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +1
Query: 505 SSAGNTNAVVTESF-FNDAEAGYGSSTSS 588
SSA + + + S+ ND GYGS+ SS
Sbjct: 36 SSASDDDGCSSSSWQTNDGAGGYGSAASS 64
>09_02_0146 +
4953007-4953297,4954105-4954341,4954592-4954669,
4954991-4955167,4955705-4955761,4955988-4956174,
4956910-4957055,4957213-4957395,4957860-4957970,
4959386-4959505,4959596-4959740,4960001-4960164,
4960816-4960902,4961062-4961390,4963426-4963507,
4963616-4963746,4963976-4964225,4965112-4965393,
4966780-4966986
Length = 1087
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +1
Query: 442 SGPSLPISRXCPSRYQRCSRRSSAGNTNAVVTESFFNDAEAGYGSSTSSALDPVV 606
S +LP S C SRY + + S G V E + N + G ++S+ L VV
Sbjct: 195 SSDNLPSSNDCLSRYPPIALQPSLGQFFLHVNEEWRNGYKTGLSRTSSAKLSNVV 249
>02_04_0616 + 24416924-24418162
Length = 412
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +3
Query: 435 ALIRTFAANITXLSLSVPALQQAIVSGKYERGRH 536
ALI+ +AN+ L SV LQQA S G H
Sbjct: 11 ALIKALSANVDKLQASVTTLQQASSSTSKHSGEH 44
>02_04_0352 + 22278514-22278721,22278871-22279136,22279228-22279833
Length = 359
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -1
Query: 382 DAVALTSIIFRPLVDSLGGNGVAHVTSWPAPSKASTIPLP 263
D V L PL+D GG G A TS A + A+ P P
Sbjct: 204 DVVGLAPCALPPLMDVSGGGGGAGTTSLSATAGAAAAPPP 243
>03_05_0554 -
25551220-25551310,25551562-25551695,25552115-25552221,
25552359-25552437,25552524-25552613,25552790-25553044,
25553388-25553537,25553677-25553976
Length = 401
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -3
Query: 542 DSVTTAFVFPADDRLLQRWYREGQXRDIGSE 450
D +FVF ++RL Q WY + R IG++
Sbjct: 11 DPEVNSFVFQQEERLFQCWYPDSFMRIIGAD 41
>01_01_0244 - 2005152-2005649,2006186-2006254
Length = 188
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -1
Query: 352 RPLVDSLGGNGVAHVTSWPAPSKASTIPLPREL 254
R +V LGG G + PAP+ AS PLP L
Sbjct: 92 RAVVVLLGGRGPEPAAASPAPAAASAPPLPLSL 124
>07_03_0418 + 17979504-17980964
Length = 486
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +3
Query: 201 SARAYHVLCVFPIPSRSHNSLGKGIVEALLGAGHEVTW 314
+A A HVL VFP P + H + L+GAG VT+
Sbjct: 4 AAAAAHVL-VFPAPGQGHINCMMHFATGLVGAGLHVTF 40
>07_03_0415 + 17920383-17921843
Length = 486
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +3
Query: 201 SARAYHVLCVFPIPSRSHNSLGKGIVEALLGAGHEVTW 314
+A A HVL VFP P + H + L+GAG VT+
Sbjct: 4 AAAAAHVL-VFPAPGQGHINCMMHFATGLVGAGLHVTF 40
>01_01_0774 -
6004040-6004371,6004634-6005215,6005391-6005657,
6005845-6006163
Length = 499
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 481 RYQRCSRRSSAGNTNAVVTESFFNDAEA 564
RYQ R S AGN + V SFFN ++
Sbjct: 133 RYQNGRRNSFAGNLSTVERRSFFNHTDS 160
>07_03_1131 +
24190675-24190814,24190938-24191021,24191628-24191735,
24193212-24193266,24193360-24193404
Length = 143
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -3
Query: 464 DIGSEGPDQRHTSISVSLVVHVDHFTYR 381
++GSE PD RH + + L HV+ FT++
Sbjct: 70 NLGSEVPDTRHIFVDIGLGFHVE-FTWQ 96
>05_06_0209 -
26389902-26389928,26389981-26390161,26390265-26390407,
26390480-26390588,26390839-26391023,26391428-26392082,
26392392-26392496,26392757-26392844,26392885-26392947,
26393451-26393513,26394328-26394484
Length = 591
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 428 SISVSLVVHVDHFTYRCC 375
SISVS+ +H HF + CC
Sbjct: 379 SISVSMSIHQTHFCFVCC 396
>03_02_0538 +
9299639-9300046,9300362-9300509,9300648-9300652,
9302886-9303290,9303379-9304608
Length = 731
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +1
Query: 538 ESFFNDAEAGYGSSTSSALDP-VVQRL 615
+ FND + Y SSTS+ +DP ++QRL
Sbjct: 200 DDLFNDLVSVYNSSTSANVDPDILQRL 226
>02_03_0016 +
13962086-13962326,13962529-13962614,13962652-13962750,
13963022-13963131,13964024-13964083,13964220-13964304
Length = 226
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 512 ADDRLLQRWYREGQXRDIGSEGPD 441
ADD + RWY +GQ D EG D
Sbjct: 103 ADDAAVVRWYSDGQAVDPRYEGDD 126
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,673,976
Number of Sequences: 37544
Number of extensions: 452253
Number of successful extensions: 1339
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1338
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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