Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31240
         (733 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.0  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   3.0  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          22   6.8  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   6.8  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    21   9.0  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   9.0  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +1

Query: 478 SRYQRCSRRSSAGNTNAVVTESFFNDAEAGYGSSTSSALDPVVQR 612
           S+ QR S  S + N+N   +  +     + +GSS  +   P+ +R
Sbjct: 24  SQSQRSSGSSISRNSNRSESSGYCGRRPSTFGSSNEALPQPISKR 68


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +1

Query: 478 SRYQRCSRRSSAGNTNAVVTESFFNDAEAGYGSSTSSALDPVVQR 612
           S+ QR S  S + N+N   +  +     + +GSS  +   P+ +R
Sbjct: 24  SQSQRSSGSSISRNSNRSESSGYCGRRPSTFGSSNEALPQPISKR 68


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 458 GSEGPDQRHTSISVSLVVH 402
           GS GP+  + S SVS  VH
Sbjct: 38  GSYGPEAGNVSCSVSWEVH 56


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = +3

Query: 222 LCVFPIPSRSHNSLGKGIVEALLGAGHEVTWATPFPPKEST 344
           L VF +PS S   +  GI   L      +T     PP E T
Sbjct: 232 LLVFYVPSESGEKVTLGISALLSMTVFLMTIRESLPPTEKT 272


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 19/86 (22%), Positives = 30/86 (34%)
 Frame = +3

Query: 291 GAGHEVTWATPFPPKESTKGLKIIDVSATASVSEMIDMNDQRNADAGMALIRTFAANITX 470
           G+  +     P PP    +G  ++D+      S   D        AGM        N   
Sbjct: 33  GSAEQPKEQEPLPPVTPPQGENMLDMDLRGIYSNRTDFTTTFRPTAGMTFNGGVGPN--G 90

Query: 471 LSLSVPALQQAIVSGKYERGRHGVLL 548
           L+     L ++ +    ER +H V L
Sbjct: 91  LTKKQEMLVRSAIKYWVERHKHIVRL 116


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 6/23 (26%), Positives = 15/23 (65%)
 Frame = +3

Query: 504 IVSGKYERGRHGVLLQRCRGGLR 572
           I+  +YE  +HG++++   G ++
Sbjct: 262 IIKVQYELAKHGIVIEELGGEIQ 284


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,625
Number of Sequences: 438
Number of extensions: 4338
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)