Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31239
         (574 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    30   0.21 
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    29   0.64 
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    28   0.84 
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar...    28   0.84 
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   3.4  
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c...    25   7.9  

>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2111

 Score = 30.3 bits (65), Expect = 0.21
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -3

Query: 356 NVVPCGPSGHYRTCNRYSAFQNLLICETFSSRSVYHVC 243
           ++  CG   HY   N+  + +  L+CE+  +R V+H+C
Sbjct: 703 SIAACGAVHHYLVQNKLRS-RVALVCESGDAREVHHMC 739


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 28.7 bits (61), Expect = 0.64
 Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 1/114 (0%)
 Frame = +3

Query: 114 QLYLDEVLNEILAAKGVVPDAKERDRLILAEIAFHCLK-KRPNATNMINGSTGESFTNEQ 290
           QL L  VL+  L    V P A   D LI +    +           +++   GES  +E+
Sbjct: 294 QLQLKNVLSSFLEFLEVTPAASVSDMLIQSLSIINSPSFSLGKIVFLVHNIDGESLIDER 353

Query: 291 ILKRAVSIARSIMARGAAGNNIMVVMRNHQNLFSIYWSLLLSGALPFMMDPSTT 452
                 +IA S        N   +   +H N F++ W   L  +  F+M  +TT
Sbjct: 354 FQSALAAIASS-------KNVYFIASVDHVN-FALLWDTSLESSFNFVMHDATT 399


>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 28.3 bits (60), Expect = 0.84
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -2

Query: 306 QRVSEFAHL*NFLQSIRLSCLWRLVVSLDNGKQFLLISIYPALLHLERHLW 154
           ++  +F  L N L   RLS  WR++VS  N +  + I   P L   ++ +W
Sbjct: 461 EKAKDFLELENSLSINRLSISWRIMVS--NFEPAIFIQHTPTLHGTDKSVW 509


>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 524

 Score = 28.3 bits (60), Expect = 0.84
 Identities = 16/28 (57%), Positives = 19/28 (67%)
 Frame = +3

Query: 120 YLDEVLNEILAAKGVVPDAKERDRLILA 203
           YLDEV NE++   G   DAKE DR +LA
Sbjct: 78  YLDEVKNELVEDGGF--DAKEVDRELLA 103


>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 315

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +3

Query: 375 HQNLFSIYWSLLLSGALPFMMDPSTTVYELSYFLQLL 485
           H N+ S    L   G LP  +D  T V +LSY   LL
Sbjct: 167 HVNILSKADLLCTYGTLPMKLDFFTEVQDLSYLAPLL 203


>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 367

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 453 VYELSYFLQLLXPSIVFCDREYY-NDIKKIF 542
           V+ L +F +   PSI+FC ++ + + + K F
Sbjct: 4   VFALGHFCEAEGPSIIFCTQKLHRSTVSKFF 34


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,356,220
Number of Sequences: 5004
Number of extensions: 48143
Number of successful extensions: 136
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)