Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31239
         (574 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23521-8|AAC46810.4|  505|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z81476-3|CAB03922.3|  592|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z75545-3|CAA99886.1|  922|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U80438-1|AAB37631.1|  400|Caenorhabditis elegans Hypothetical pr...    27   7.2  

>U23521-8|AAC46810.4|  505|Caenorhabditis elegans Hypothetical
           protein F41C3.3 protein.
          Length = 505

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = +3

Query: 345 GNNIMVVMRNHQNLFSIYWSLLLSGALPFMMDPSTTVYELSYFLQLLXPSI-VFCDREYY 521
           G+ +M  +    +  ++Y + L  GAL   ++P  T  E +++++   PSI V C+ E  
Sbjct: 72  GDRVMARVSKTTDTAALYIACLQIGALYIPVNPGYTESEAAHYIKDATPSILVSCNEE-- 129

Query: 522 NDIKKIFR 545
             + K+FR
Sbjct: 130 --LDKVFR 135


>Z81476-3|CAB03922.3|  592|Caenorhabditis elegans Hypothetical
           protein C25F9.4 protein.
          Length = 592

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 45  RLPRLPNTYKMSHTVLRGKPNASQLYLDEVLNEILAA 155
           R PR PN YK   T  + + N ++  + +  N +LAA
Sbjct: 440 RFPRSPNDYKKHITNAKKEKNENEPNISKFCNNMLAA 476


>Z75545-3|CAA99886.1|  922|Caenorhabditis elegans Hypothetical
           protein K10D3.4 protein.
          Length = 922

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 356 NVVPCGPSGHYRTCNRYS 303
           N+VP   +G+YRTCN Y+
Sbjct: 870 NLVPVELAGNYRTCNPYA 887


>U80438-1|AAB37631.1|  400|Caenorhabditis elegans Hypothetical
           protein T19B4.5 protein.
          Length = 400

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 380 LMVSHHHHNVVPCGPSGHYRTCNRYSA 300
           ++V HHHH  +   P  H+   NR SA
Sbjct: 40  MVVDHHHHPQLRGNPMHHHHYDNRQSA 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,057,918
Number of Sequences: 27780
Number of extensions: 273743
Number of successful extensions: 731
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)