Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31237
         (318 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...    29   0.13 
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...    29   0.17 
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   1.6  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    25   2.1  
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    25   2.1  
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar...    25   2.8  
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces...    25   3.7  
SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyc...    24   6.4  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    24   6.4  
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    24   6.4  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    24   6.4  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    23   8.5  
SPAC513.03 |mfm2||M-factor precursor Mfm2|Schizosaccharomyces po...    23   8.5  

>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 29.5 bits (63), Expect = 0.13
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -1

Query: 297 VSRDIRTTTEARRPGTARNTRRPKPTELSV 208
           V+R +RT+T  RRP T    R+PK    SV
Sbjct: 21  VARKVRTSTTFRRPKTLELARKPKYARKSV 50


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 29.1 bits (62), Expect = 0.17
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -1

Query: 297 VSRDIRTTTEARRPGTARNTRRPKPTELSV 208
           V++ +RT+T  RRP T + +R+PK    SV
Sbjct: 21  VAKKVRTSTTFRRPKTLQLSRKPKYARKSV 50


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 270 EARRPGTARNTRRPKPTELSVCCRERSETPRHRN 169
           EA  PG  RNTR+    ++S+    ++ET   +N
Sbjct: 475 EADYPGVNRNTRQDDVQDISMETESQNETDESQN 508


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 283 QDHHRGPAPRHSEKHSASEADRAERLLPGALRD 185
           ++HH+GP  +H+E+   +     E L+  A  D
Sbjct: 416 KEHHQGPKEKHNERPEQNMQSSHELLVIEAFAD 448


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = -1

Query: 246 RNTRRPKPTELSVCC--RERSETPRHRNKPSRPVWSRRSPHH 127
           RN +  K T  SV      R +  R  N P  P W+ R+ HH
Sbjct: 866 RNKKAAKLTADSVPFPFESREQYERSLNLPMGPEWTTRASHH 907


>SPBC4B4.04 |||translation initiation factor eIF2A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 576

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 305 AEP*AGTSGPPQRPGAQAQRETLGVRSRQS*AFAAGSAQR 186
           A+P    +G  + PGA+ Q  T   R  +    ++GSA +
Sbjct: 440 AKPSVKPAGAYRPPGARGQNSTFSYRREEIDVMSSGSANK 479


>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 54  VSPSMTMLIQQLNCSSSISKYYNGNGVDSVETKQVEKVYSGD 179
           VSP++  L+   NCS S +   +  GV S   K  + ++ GD
Sbjct: 53  VSPTLERLVAPFNCSPSSTPLQDVAGVGS---KMSDTLWMGD 91


>SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 140

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 76  NIVMLGET*LSLENNLGEKLRRKP 5
           N+V+LGE  L  E +  ++LRR P
Sbjct: 76  NVVLLGELDLDKEYDAVKQLRRMP 99


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = -1

Query: 252  TARNTRRPKPTELSVCCRERSETPRHRNKPSRPVWSRRSPHHFH 121
            T+ +     P   SV  R +S+  RH    S    S+   HH H
Sbjct: 1268 TSSSMASAAPARTSVS-RSKSKAERHETSTSSRKSSKSGEHHHH 1310


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 275 PQRPGAQAQRETLGVRSRQS*AFAAGSAQRRP 180
           P +P   +  +TLG  +R S A  AGS    P
Sbjct: 296 PYKPYLNSSHDTLGSSTRPSSADTAGSPATSP 327


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 18/60 (30%), Positives = 24/60 (40%)
 Frame = +1

Query: 136 TPSRPNRSRRFIPVTGRL*ALPAANAQLCRLRTPSVSRCAWAPGLCGGPDVPAHGSAPPG 315
           TPS P  S   +P    + A+P        + T S       P + G P V A G+  PG
Sbjct: 430 TPSLPVPSIPAVPGMEAM-AMPPGVTSSIAVPTTSSMPLQGMPTMFGAPGVSAPGTEAPG 488


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +3

Query: 18  NFSPKLFSRLNYVSP-SMTMLIQQLN 92
           NF PK+ + L + SP ++++LIQ  N
Sbjct: 242 NFWPKISASLGFPSPDAISLLIQYYN 267


>SPAC513.03 |mfm2||M-factor precursor Mfm2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 44

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 96  SSSISKYYNGNGVDSVETKQVE 161
           SSSI   YN N  D V+T+ ++
Sbjct: 10  SSSIVNAYNNNPTDVVKTQNIK 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,316,160
Number of Sequences: 5004
Number of extensions: 23480
Number of successful extensions: 96
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)