Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31231
         (720 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0124 + 18232961-18236636,18236810-18237288,18237549-182376...    28   8.6  
05_04_0122 + 18198594-18202269,18202551-18202591,18203273-182032...    28   8.6  

>05_04_0124 + 18232961-18236636,18236810-18237288,18237549-18237629,
            18238033-18238041,18238096-18238248
          Length = 1465

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 419  LLVVRASCRIRHEGLRPRCWIKIKFKC 499
            L++    C I+HEGL+   W  I F C
Sbjct: 989  LVLSSCDCFIQHEGLQSPLWFWISFGC 1015


>05_04_0122 + 18198594-18202269,18202551-18202591,18203273-18203281,
            18203336-18203551,18204257-18204361,18204761-18204919
          Length = 1401

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 419  LLVVRASCRIRHEGLRPRCWIKIKFKC 499
            L++    C I+HEGL+   W  I F C
Sbjct: 989  LVLSSCDCFIQHEGLQSPLWFWISFGC 1015


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,722,012
Number of Sequences: 37544
Number of extensions: 169003
Number of successful extensions: 384
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)