Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31228
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    27   3.7  
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom...    27   3.7  
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||...    26   6.4  
SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr 1|||Ma...    26   6.4  
SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po...    26   6.4  
SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   8.5  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    25   8.5  

>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 14/58 (24%), Positives = 29/58 (50%)
 Frame = -2

Query: 566 KRYPHVTQIVITILHKMSHFMSQVSHFNRKLFVFFFLPMLIALRGYFIFALTFVGELA 393
           +RYP +   +I ++   S+F S   H +  + + F     I L+ Y  F +++  +L+
Sbjct: 261 RRYPSIESCIILLMAYTSYFFSNGCHMSGVVSLLF---CGITLKHYAFFNMSYKAKLS 315


>SPCC970.04c |mob2||protein kinase activator
           Mob2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +3

Query: 192 RHHKHRSPSSSNPSLATKGSTSELTHRHSPLSFSPDLL 305
           RH      SSS+ S + K STS+L    SP S  P  L
Sbjct: 18  RHQNLSDASSSSGSFSKKSSTSQLVRTGSP-SVEPTAL 54


>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1260

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = +1

Query: 316 VSDPVVDSAK----HCSC*GQCYQLSGLSPASSPTNVRA 420
           V  PV D+ K    +C+  G    + G++P S P+N +A
Sbjct: 830 VVTPVFDNNKDIIFYCAARGHMVDVGGITPGSMPSNSKA 868


>SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 319

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 16/54 (29%), Positives = 30/54 (55%)
 Frame = +2

Query: 23  FIVIINYYFRRYNILRFTWSRSESVSSKVFETSKKISNKYF*LSFPNACSITNR 184
           +++ IN ++ R + L F+WS  ES++S+  +   ++  K    S  +A   TNR
Sbjct: 236 WLIDINPFYPRTDGLLFSWSELESMNSENMKPEIRLIPKGSMPSTGSAKYYTNR 289


>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 445 ISIGRKKNTNNLRLKCDTCDIKCDILCNIVIT 540
           +  GR++  NN  L CDTC   C + C++ IT
Sbjct: 279 LEAGRERVGNNAILYCDTC--PC-LTCSVKIT 307


>SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +1

Query: 472 NNLRLKCDTCDIKCDILCNIVITICVTC 555
           NN+RLK  TC+      C I I  C  C
Sbjct: 67  NNMRLKVGTCESCKKHTCAICIRQCHKC 94


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = -3

Query: 268 WVNSLVEPFVASDGFDEDGDRCLWCLK 188
           W      P VA D  DEDG   +W LK
Sbjct: 898 WEPRWFVPSVAGDDEDEDGSGPIWQLK 924


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,807,154
Number of Sequences: 5004
Number of extensions: 54872
Number of successful extensions: 170
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)