Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31228
         (735 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18...    30   1.7  
01_01_0060 + 477667-477816,479312-479722                               30   2.2  
06_01_0196 + 1520015-1520191,1520483-1520527,1521851-1521910,152...    29   3.8  
10_08_0898 + 21424379-21424792,21424974-21425723                       28   6.7  
07_03_0162 - 14565165-14565350,14565757-14566131,14566287-14566922     28   8.8  
04_01_0359 + 4711289-4713052,4713423-4713950                           28   8.8  

>05_01_0028 +
           182528-183852,183967-184127,184872-185116,185330-186073
          Length = 824

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 141 ISNCLFQTRVLSQIGAFRHHKHRSPSSSNPSLATKGSTSELTHRH 275
           +S CL     L  +  FR  +HR  S S+P+  +  S S  T+ H
Sbjct: 206 LSLCLLLLSALLSLHLFRRLRHRHHSHSHPNARSPSSRSGATNHH 250


>01_01_0060 + 477667-477816,479312-479722
          Length = 186

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +3

Query: 150 CLFQTRVLSQIGAFRHHKHRS-PSSSNPSLATKGSTSELTHRHSPLSFSPDL 302
           CL  + ++      RHH H S  SSS+P  +TK + ++L H     ++   L
Sbjct: 18  CLKLSSLIPAAAPRRHHHHYSTSSSSSPPSSTKEAVTQLDHLEQAAAYIKQL 69


>06_01_0196 +
           1520015-1520191,1520483-1520527,1521851-1521910,
           1522246-1522358,1522432-1522642,1523087-1523133,
           1523211-1523369,1523521-1523624,1524300-1524634
          Length = 416

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -3

Query: 235 SDGFDEDGDRCLWCLKAP 182
           SDGFDE  D C  CL+ P
Sbjct: 282 SDGFDEGADACAVCLERP 299


>10_08_0898 + 21424379-21424792,21424974-21425723
          Length = 387

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +3

Query: 195 HHKHRSPSSSNPSLATKGSTSELTHRHSPLSFSPD 299
           HH H       PS AT  +TS   H+ S LSF+ D
Sbjct: 101 HHHHHIGGMGEPSGATPSATSS-DHQTSMLSFADD 134


>07_03_0162 - 14565165-14565350,14565757-14566131,14566287-14566922
          Length = 398

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -2

Query: 527 LHKMSHFMSQVSHFNRKLFVFFFLPMLIALRGYFIFALTFVGELA 393
           +H +   M  V+ F+  +F+  FLP+ +  R   + A  F+G+LA
Sbjct: 214 VHVLPREMLGVATFSVAVFLLRFLPLWVVDRILVVLAWLFLGDLA 258


>04_01_0359 + 4711289-4713052,4713423-4713950
          Length = 763

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/48 (33%), Positives = 29/48 (60%)
 Frame = -3

Query: 724 STTAGRAVNFKMFEQIIEQ*LVSRNVIWDVSDC*PLSSTIMVLMPLSL 581
           ST++   ++F M ++I++  +++ N IW VSD   L  TIM+ +   L
Sbjct: 571 STSSEMGLSFNMCKKIVQ--MMNGN-IWSVSDSKGLGETIMLALQFQL 615


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,097,289
Number of Sequences: 37544
Number of extensions: 331354
Number of successful extensions: 751
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)