Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31228
         (735 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53139-11|AAK18936.2|  353|Caenorhabditis elegans Serpentine rec...    29   2.6  
U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related...    29   4.5  
U41026-6|AAA82353.1| 1081|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U58729-3|AAM54204.1|  955|Caenorhabditis elegans Hypothetical pr...    28   6.0  

>U53139-11|AAK18936.2|  353|Caenorhabditis elegans Serpentine
           receptor, class w protein71 protein.
          Length = 353

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -2

Query: 530 ILHKMSHFMSQVSHFNRKLFVF-FFLPMLIALRGYFIFALTFVGELAGLKP 381
           ++ K+ +  SQ+SHF   LF+F  F+P+   +   F F    + +    +P
Sbjct: 127 LIMKLPNKSSQLSHFKVGLFIFLIFIPISFLVSALFYFGKELIKKQLSFQP 177


>U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related.
           see also lmb-protein 2 protein.
          Length = 1535

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 457 RKKNTNNLRLKCDTCDIKCDILCNIVITICVTCGYRF 567
           R+ N +   L+C+  D +CD L N++   C  C + F
Sbjct: 883 RRPNNDYTLLECNQQDGQCDCLPNVIGIQCDQCAHGF 919


>U41026-6|AAA82353.1| 1081|Caenorhabditis elegans Hypothetical protein
            C28G1.4 protein.
          Length = 1081

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +1

Query: 391  PASSPTNVRAKMK*PLKAISIGRKKN-TNNLRLKCDTCDIKC 513
            P   P   + K+    KA +  R K  ++ +  +CD CD KC
Sbjct: 897  PIKEPVREKNKLPMSSKAKAAHRSKQFSSTVEFRCDKCDFKC 938


>U58729-3|AAM54204.1|  955|Caenorhabditis elegans Hypothetical
           protein F02G3.1c protein.
          Length = 955

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -2

Query: 509 FMSQVSHFNRKLFVFFFLPMLIALRGY 429
           F S+V + NR++ + FFL +L+ L G+
Sbjct: 21  FSSEVENGNRRIILIFFLLLLLILSGW 47


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,581,319
Number of Sequences: 27780
Number of extensions: 312820
Number of successful extensions: 935
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)