Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31224
         (462 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|ch...   128   5e-31
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb...    41   1e-04
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom...    27   1.1  
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase...    27   1.4  
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc...    26   2.4  
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    26   3.2  
SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces pombe...    25   4.3  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    25   5.6  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   7.4  
SPAC222.11 |hem13||coproporphyrinogen III oxidase |Schizosacchar...    25   7.4  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    24   9.8  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    24   9.8  

>SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 341

 Score =  128 bits (308), Expect = 5e-31
 Identities = 66/115 (57%), Positives = 82/115 (71%), Gaps = 1/115 (0%)
 Frame = +2

Query: 113 KNFSTTSQRNFKXXXXXXXXXIGQPLALLLKQNPLVTRLALYDIAPVTPGVAADLSHVNT 292
           ++FSTTS R FK         IGQPL++LLK N  V+ LAL+DI    PGVAAD+ H+NT
Sbjct: 19  RSFSTTSSRAFKVAVLGAGGGIGQPLSMLLKLNDKVSELALFDIRGA-PGVAADIGHINT 77

Query: 293 PAKVSGHKGPEE-LSAAIKDADVVVIPAGVPRKPGMTRDDLFNTNASIVRDIALS 454
            + V G+   ++ L  A+  ADVV+IPAGVPRKPGMTRDDLF TNASIVRD+A +
Sbjct: 78  TSNVVGYAPDDKGLEKALNGADVVIIPAGVPRKPGMTRDDLFATNASIVRDLAFA 132


>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 40.7 bits (91), Expect = 1e-04
 Identities = 41/120 (34%), Positives = 54/120 (45%), Gaps = 7/120 (5%)
 Frame = +2

Query: 107 GAKNFSTTSQRN--FKXXXXXXXXX--IGQPLALLLKQNPLVTRLALYDI-APVTPGVAA 271
           G+K FS  S R+  FK           +G   A  L  + L   + + D+      G A 
Sbjct: 4   GSKVFSNDSVRSSSFKSIKIVIVGAGNVGSTTAFTLLLSGLAAEIVIIDLNKKKAEGEAM 63

Query: 272 DLSHVNTPAKVSGHKGPEELS--AAIKDADVVVIPAGVPRKPGMTRDDLFNTNASIVRDI 445
           DL+H    A +S H+    L      KDA  VVI AG  +KPG TR DL   N SI ++I
Sbjct: 64  DLNHA---APLS-HETRVYLGDYKDCKDATAVVITAGKNQKPGETRMDLLKANISIFKEI 119


>SPAC23H3.05c |swd1||COMPASS complex subunit
           Swd1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 457 NGQSNVTDNGSISVE*VITGHSRFTGYSCW 368
           NG   + D  + SV  V+TGH+R     CW
Sbjct: 45  NGSVVIWDLSTFSVSRVLTGHTRAIQSVCW 74


>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
           desaturase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 362

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 91  PCCTKWCKELFHHITEEL*SGGRWCR 168
           P C  WC  ++  IT+   + G WCR
Sbjct: 319 PDCKSWCGIIYQFITDS--NVGMWCR 342


>SPBC18H10.04c |sce3|tif48|translation initiation factor
           eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
 Frame = +1

Query: 148 SGGRWCRRWYRPAFGPSTEAESSG-DQAGFIRHSACDPRRRSRPFPREHPSQGQRP 312
           S G W RR   P   P+          +G  R  A DP  R R  PRE   +G  P
Sbjct: 179 STGDWVRRGPLPPAEPAESPFGKRRTNSGRFRDPARDPSDRVREEPREWVRRGPLP 234


>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 79  KTCRPCCTKWCKELFHHITEEL*SGGRWCRRWY 177
           K C+ C  + C+  +HHI E+L      CRR Y
Sbjct: 33  KPCQ-CGYRVCRFCWHHIKEDLNGRCPACRRLY 64


>SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +2

Query: 233 LYDIAPVTPGVAADLSHVNTPAKVSGHKGPEELSAA 340
           L + APV  G A   S   +   V+G  GP ELS A
Sbjct: 12  LINSAPVILGYALQNSLQTSSVIVTGRLGPSELSVA 47


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
           Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +2

Query: 215 LVTRLALYDIAPVTPGVAADLSHVNTPAKVSGHKGPEELSAAI 343
           ++ RLALY+ A V P +   +  + +  + SG+   +E SA +
Sbjct: 586 IIGRLALYNPAHVMPSLRKTIIQLLSDMEYSGNSRQKEESAQL 628


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +1

Query: 160 WCRRWYRPAFGPSTEAESSGDQAGFIRHSACD 255
           WC +  +P F  +    S GD  G  R   C+
Sbjct: 260 WCGKQEKPEFVKNLVPHSCGDPCGKTRGQDCE 291


>SPAC222.11 |hem13||coproporphyrinogen III oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 312

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 314 KGPEELSAAIKDADVVVIPAGVP 382
           K P+EL A +KD     +PA VP
Sbjct: 205 KDPQELFAFVKDCAHTFLPAYVP 227


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 138 LCDVVEKFFAPFCTARAAG 82
           LC++V KFF   CT    G
Sbjct: 217 LCNLVHKFFVDACTVPGEG 235


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 273 SAATPGVTGAMSYKASLVTRGFCFSRRAKGW 181
           +A T  + G + +K  L+T G   +R AK W
Sbjct: 642 NAKTVTLEGTVIHKTGLITGGSSNNRSAKHW 672


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,965,686
Number of Sequences: 5004
Number of extensions: 41313
Number of successful extensions: 109
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)