Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31224
         (462 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002197-5|AAB53985.1|  341|Caenorhabditis elegans Malate dehydr...   146   9e-36
U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical pr...    31   0.40 
U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical pr...    31   0.40 
Z70038-3|CAA93883.2|  541|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ...    27   4.9  
Z81129-1|CAB03408.1|  350|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z50863-2|CAA90737.1|  351|Caenorhabditis elegans Hypothetical pr...    27   6.5  
CU457740-8|CAM36338.1|  362|Caenorhabditis elegans Hypothetical ...    27   6.5  
AL117204-1|CAB55141.1|  328|Caenorhabditis elegans Hypothetical ...    27   6.5  
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AF022981-11|AAG24207.1|  746|Caenorhabditis elegans Hypothetical...    27   8.6  

>AF002197-5|AAB53985.1|  341|Caenorhabditis elegans Malate
           dehydrogenase protein 1 protein.
          Length = 341

 Score =  146 bits (353), Expect = 9e-36
 Identities = 70/95 (73%), Positives = 82/95 (86%)
 Frame = +2

Query: 176 IGQPLALLLKQNPLVTRLALYDIAPVTPGVAADLSHVNTPAKVSGHKGPEELSAAIKDAD 355
           IGQPL LLLKQ+PLV  LALYD+   TPGVAADLSH+++ AKV+ H GP+EL AA+++AD
Sbjct: 40  IGQPLGLLLKQDPLVAHLALYDVVN-TPGVAADLSHIDSNAKVTAHTGPKELYAAVENAD 98

Query: 356 VVVIPAGVPRKPGMTRDDLFNTNASIVRDIALSIA 460
           V+VIPAGVPRKPGMTRDDLFNTNA IVRD+A  IA
Sbjct: 99  VIVIPAGVPRKPGMTRDDLFNTNAGIVRDLAAVIA 133


>U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical protein
            C23F12.1a protein.
          Length = 2329

 Score = 31.1 bits (67), Expect = 0.40
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
 Frame = +2

Query: 206  QNPLVT-RLALYDIAPVTPGVAADLSHVNTPAKVS---GHKGPEELSAAIKDADVVVIPA 373
            Q+PL    + +YD + +  G   + S++N   + +   G  G   L  AIKDAD V+IP+
Sbjct: 980  QHPLSPFAVRVYDASEIIVGEIPNQSNLNDTVEFTVDAGRAGFGNLEMAIKDADGVIIPS 1039

Query: 374  GV 379
             V
Sbjct: 1040 HV 1041


>U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical protein
            C23F12.1b protein.
          Length = 2747

 Score = 31.1 bits (67), Expect = 0.40
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
 Frame = +2

Query: 206  QNPLVT-RLALYDIAPVTPGVAADLSHVNTPAKVS---GHKGPEELSAAIKDADVVVIPA 373
            Q+PL    + +YD + +  G   + S++N   + +   G  G   L  AIKDAD V+IP+
Sbjct: 980  QHPLSPFAVRVYDASEIIVGEIPNQSNLNDTVEFTVDAGRAGFGNLEMAIKDADGVIIPS 1039

Query: 374  GV 379
             V
Sbjct: 1040 HV 1041


>Z70038-3|CAA93883.2|  541|Caenorhabditis elegans Hypothetical
           protein ZK1067.4 protein.
          Length = 541

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 143 SSSVMWWKSSLHHFVQQGRQV 81
           S  ++WWKS  +H+ ++ RQV
Sbjct: 120 SPPIVWWKSVCYHYTRKTRQV 140


>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
           protein H43E16.1 protein.
          Length = 1203

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = -1

Query: 405 SRVIPGLRGTPAGMTTTSASLMAADSSSGPLWPLTLAGVFTWERSAATPGVTGAMSYKAS 226
           S+  PG+     GMTT+ ASL +  +S       +  G FT   +       GAM+  +S
Sbjct: 418 SQTTPGVSSASTGMTTSQASLRSTQNS-----VTSTPGSFTVTSTPTITSTQGAMASSSS 472


>Z81129-1|CAB03408.1|  350|Caenorhabditis elegans Hypothetical
           protein T23F1.3 protein.
          Length = 350

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +3

Query: 159 LVPPVVSASLWPFY*SRILW*PGWLYT 239
           + P ++   +WP+    + W  GWLY+
Sbjct: 265 IAPTLLVPLIWPYLKIEVSWQTGWLYS 291


>Z50863-2|CAA90737.1|  351|Caenorhabditis elegans Hypothetical
           protein C14H10.4 protein.
          Length = 351

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 159 LVPPVVSASLWPFY*SRILW*PGWLYT 239
           L+ PVV AS + F+ S+  W  GWLY+
Sbjct: 265 LLCPVV-ASFFHFFFSKFSWQTGWLYS 290


>CU457740-8|CAM36338.1|  362|Caenorhabditis elegans Hypothetical
           protein C50E10.8 protein.
          Length = 362

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 15/38 (39%), Positives = 16/38 (42%)
 Frame = -1

Query: 393 PGLRGTPAGMTTTSASLMAADSSSGPLWPLTLAGVFTW 280
           P  RG P    T   + MA   S    WPL L G  TW
Sbjct: 97  PVTRGLP--WWTCDVAKMARLDSISSAWPLFLGGALTW 132


>AL117204-1|CAB55141.1|  328|Caenorhabditis elegans Hypothetical
           protein Y116A8C.1 protein.
          Length = 328

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 138 LCDVVEKFFAPFCTARAAG 82
           +C  +  FF PFC  RAAG
Sbjct: 164 VCISIRTFFGPFCQNRAAG 182


>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical
           protein W01F3.3 protein.
          Length = 2175

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
 Frame = +1

Query: 1   GGSGGNSSNIHVYTR*TN---NENVLPRPKTC 87
           GG GGN++N       TN   N  V P P  C
Sbjct: 897 GGCGGNANNFATLQECTNKCVNRGVCPEPPAC 928


>AF022981-11|AAG24207.1|  746|Caenorhabditis elegans Hypothetical
           protein W03F9.4 protein.
          Length = 746

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -3

Query: 103 LYSKGGRF*GAGEHFRCLFNVYIRV--YLNY 17
           ++SK GRF    EH  C   +Y++V  Y+ Y
Sbjct: 433 IFSKNGRFSSNAEHSPCDAMIYVQVREYIKY 463


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,296,804
Number of Sequences: 27780
Number of extensions: 259781
Number of successful extensions: 725
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)