Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31222
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    27   2.0  
SPAC4A8.04 |isp6|prb1|vacuolar serine protease Isp6|Schizosaccha...    27   3.5  
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    26   6.1  
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo...    25   8.0  

>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 520 CCNGSSC*ISNFCHFKCVPVHWVG 449
           C  GSSC  SN  + +C+PV + G
Sbjct: 44  CVVGSSCIYSNPWYSQCIPVDYTG 67


>SPAC4A8.04 |isp6|prb1|vacuolar serine protease
           Isp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +2

Query: 170 LEALADARIKYDDIQQAVCGYVFGDSTCGQRVLYQVGMTGIPIYNV 307
           L  ++   +KYDDI +    YV+ DS+ G  +   V  TG+ I++V
Sbjct: 189 LARISHKSVKYDDIGK----YVY-DSSAGDNITAYVVDTGVSIHHV 229


>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -1

Query: 594 AILARWSSVVPYFFMCSMAALPKYCAVMGAPVKSAISAILS 472
           A+ A    V P   +CS A     C+  G P  S IS +LS
Sbjct: 359 AVSANAFPVTPNTTICSNAVKNLKCSANGTPSGSKISQVLS 399


>SPAC3A11.02 |cps3|mug188|zinc finger protein
           Cps3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
 Frame = -3

Query: 697 EDRKSFSNSEFSSTVYSLFALSPRIFNSMTVIFGCNFS*MELCRS----IFFHVLYGSIT 530
           ED K +  SEF+S   SL   SP+    +     C F     C S    IF H L  +  
Sbjct: 11  EDMKKYHLSEFNSEATSLTRPSPKSLQHVP----CKFFRQGTCTSGKNCIFSHDLELATE 66

Query: 529 KVLC 518
           K +C
Sbjct: 67  KTIC 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,958,075
Number of Sequences: 5004
Number of extensions: 62846
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)