Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31222
         (708 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1230 - 35099942-35100018,35100138-35100221,35100367-351004...    51   8e-07
10_08_0258 + 16261454-16261540,16261636-16261712,16262734-162628...    37   0.014
06_03_1453 - 30258527-30258685,30259823-30260071,30260383-302604...    29   2.7  
01_06_1684 + 39151412-39151702,39152410-39152548,39152926-391530...    29   2.7  
11_01_0574 + 4582098-4582331,4582450-4582492,4582683-4582757,458...    28   8.4  

>02_05_1230 -
           35099942-35100018,35100138-35100221,35100367-35100475,
           35100564-35100687,35101157-35101253,35101375-35101507,
           35101654-35101731,35101821-35101928,35102011-35102078,
           35102181-35102279,35102379-35102505,35102623-35102707,
           35103297-35103373,35103482-35103562
          Length = 448

 Score = 51.2 bits (117), Expect = 8e-07
 Identities = 51/184 (27%), Positives = 76/184 (41%), Gaps = 9/184 (4%)
 Frame = +2

Query: 86  VYVVGVGMTNFVKPSTGG---DYPDFGKEAVLEALAD-ARIKYDDIQQAVCGYVFGDST- 250
           V VV    T   K   GG    YP+     VL+A+ D  +I   +I   V G V G  + 
Sbjct: 49  VVVVAAYRTPICKAKRGGFKDTYPEDLLTVVLKAVLDNTKINPGEIGDIVVGTVLGPGSQ 108

Query: 251 ----CGQRVLYQVGMTGIPIYNVNNNCSTGSNALFLSKQLIEGGMCDVALAVGFEKMAPG 418
               C     Y      +P+  VN  CS+G  A+      I+ G  D+ +  G E M+  
Sbjct: 109 RAIECRAAAFYAGVPENVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMSVN 168

Query: 419 ALGGGHFDDRTNPMDRHTLKMAEIADLTGAPITAQYFGNAAIEHMKKYGTTELHLAKIAA 598
           A+G   ++ + NP      K  +   L    IT++   N A     +YG T     + AA
Sbjct: 169 AMG---WEGQVNPKVNEVQKAQDC--LLPMGITSE---NVA----HRYGVTRQEQDQAAA 216

Query: 599 KNHR 610
           ++HR
Sbjct: 217 ESHR 220


>10_08_0258 +
           16261454-16261540,16261636-16261712,16262734-16262818,
           16262931-16263057,16263147-16263245,16263343-16263410,
           16263514-16263621,16263727-16263804,16263921-16264053,
           16264138-16264234,16264465-16264588,16264668-16264776,
           16264899-16264982,16265071-16265180
          Length = 461

 Score = 37.1 bits (82), Expect = 0.014
 Identities = 34/134 (25%), Positives = 53/134 (39%), Gaps = 10/134 (7%)
 Frame = +2

Query: 86  VYVVGVGMTNFVKPSTGGDYPDFGKEAVL----EALAD-ARIKYDDIQQAVCGYVFGDST 250
           V +V    T   K   GG + D   E +L    +AL D  ++   ++   V G V    +
Sbjct: 51  VVIVAAYRTAICKSKRGG-FKDTPAEDLLVPVFKALIDKTKLNPSEVGDIVVGTVLAPGS 109

Query: 251 -----CGQRVLYQVGMTGIPIYNVNNNCSTGSNALFLSKQLIEGGMCDVALAVGFEKMAP 415
                C     Y      +P+  VN  CS+G  A+      I+ G+ D+ +A G E M  
Sbjct: 110 QRAIECRMAAFYAGFPDTVPLMTVNRQCSSGLQAVANVASNIKAGLYDIGIAAGLESMTV 169

Query: 416 GALGGGHFDDRTNP 457
             +     D + NP
Sbjct: 170 NQV---RLDGQVNP 180


>06_03_1453 -
           30258527-30258685,30259823-30260071,30260383-30260477,
           30260543-30260657
          Length = 205

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/52 (36%), Positives = 22/52 (42%)
 Frame = -3

Query: 670 EFSSTVYSLFALSPRIFNSMTVIFGCNFS*MELCRSIFFHVLYGSITKVLCC 515
           E S+  +SLF  SPR    M V F CN       R+I  H        V CC
Sbjct: 106 EVSTLPWSLFTKSPR--RRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCC 155


>01_06_1684 +
           39151412-39151702,39152410-39152548,39152926-39153040,
           39153232-39153332,39153688-39153809,39153885-39153976,
           39155288-39155393,39155477-39155631,39155904-39156031,
           39156349-39156479,39157171-39157268,39157371-39158162,
           39158472-39158523
          Length = 773

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = +2

Query: 317 CSTGSNALFLSKQLIEGGMCDVALAVGFEKMAPGALGGGHFD 442
           CSTGS+ L     L E  +C VA  +G + MA  A G GH +
Sbjct: 172 CSTGSDVLRWRSVLEEDDICVVAKLLG-DLMAYRASGTGHLE 212


>11_01_0574 +
           4582098-4582331,4582450-4582492,4582683-4582757,
           4584344-4584465,4584547-4584654,4585975-4586119,
           4586786-4586869,4586997-4587345,4587527-4587666,
           4587784-4588037,4588409-4588576,4588686-4588976,
           4589329-4589538,4589778-4589860,4590288-4590414,
           4593624-4595516,4596274-4596395,4596487-4596628,
           4596719-4596940,4597489-4597563,4598351-4598452,
           4598616-4598819
          Length = 1730

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = -3

Query: 514 NGSSC*ISNFCHFKCVPVHWVGSVIEMTTSQSTGSHFLESYGKCYITHASF 362
           +G +  + +  H   V  HW+ S +E    Q  GSH + S   C I    F
Sbjct: 549 HGQNSMLRDSSHSTAVSTHWIRSCLEEGCFQDVGSHPIFSPLCCRIPFPGF 599


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,705,914
Number of Sequences: 37544
Number of extensions: 434776
Number of successful extensions: 942
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)