Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31220
         (615 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   1.8  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   5.5  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   5.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   5.5  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   9.6  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 85  KKRSLMGPQTGSMHHLVVNRQ 147
           KKRSLMG Q  S+  L +N +
Sbjct: 95  KKRSLMGAQGLSIRGLQINHE 115


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 416 RFTKYIKITGIVPITSSFL 360
           R  KY+ +T IVPIT +++
Sbjct: 23  RGPKYLPLTLIVPITLTYV 41


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 438 VTGLLGSLEVPFVLSEE 488
           V G+LGS+ VPF   +E
Sbjct: 370 VCGILGSILVPFFYVQE 386



 Score = 21.4 bits (43), Expect = 7.2
 Identities = 5/21 (23%), Positives = 16/21 (76%)
 Frame = -1

Query: 84  VHLLMLAVILDFCFLVLLFHI 22
           ++L++L  I+D C++ +++ +
Sbjct: 80  INLILLQNIIDICWITMVYSL 100


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 297 EILRLENESLKLEVAKYESASQKRRGD 377
           EIL +EN+ +  EV K+    QK+R +
Sbjct: 395 EILEVENDKILQEVIKFR---QKQRAE 418


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 463 SRLPKSPVTLPSPSIDVSL 407
           S+LP   +TLP  SI + L
Sbjct: 58  SKLPVKAITLPDLSIPMQL 76


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,535
Number of Sequences: 438
Number of extensions: 3656
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)