Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31218
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...   210   2e-55
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...   210   2e-55
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...   151   1e-37
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    97   3e-21
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz...    44   3e-05
SPBC2D10.07c |||mitochondrial inner membrane peptidase complex c...    27   2.8  
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar...    25   8.7  
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy...    25   8.7  

>SPCP31B10.07 |eft202||translation elongation factor 2
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score =  210 bits (512), Expect = 2e-55
 Identities = 95/145 (65%), Positives = 110/145 (75%)
 Frame = +2

Query: 14   MDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLN 193
            +DV LH DAIHRGGGQIIPT RR +YA  L A P + EPV+L EIQ  E A+GGIY VLN
Sbjct: 689  LDVVLHADAIHRGGGQIIPTARRVVYASTLLASPIIQEPVFLVEIQVSENAMGGIYSVLN 748

Query: 194  RRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 373
            ++RGHVF E Q  GTP++ +KAYLPVNESFGFT +LR  T GQAFPQ VFDHW  + GDP
Sbjct: 749  KKRGHVFSEEQRVGTPLYNIKAYLPVNESFGFTGELRQATAGQAFPQLVFDHWSPMSGDP 808

Query: 374  CEPQSKPYNVVQETRKRKGLKEGLP 448
             +P SKP  +V E RKRKGLKE +P
Sbjct: 809  LDPTSKPGQIVCEARKRKGLKENVP 833


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
            elongation factor 2 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 842

 Score =  210 bits (512), Expect = 2e-55
 Identities = 95/145 (65%), Positives = 110/145 (75%)
 Frame = +2

Query: 14   MDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLN 193
            +DV LH DAIHRGGGQIIPT RR +YA  L A P + EPV+L EIQ  E A+GGIY VLN
Sbjct: 689  LDVVLHADAIHRGGGQIIPTARRVVYASTLLASPIIQEPVFLVEIQVSENAMGGIYSVLN 748

Query: 194  RRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 373
            ++RGHVF E Q  GTP++ +KAYLPVNESFGFT +LR  T GQAFPQ VFDHW  + GDP
Sbjct: 749  KKRGHVFSEEQRVGTPLYNIKAYLPVNESFGFTGELRQATAGQAFPQLVFDHWSPMSGDP 808

Query: 374  CEPQSKPYNVVQETRKRKGLKEGLP 448
             +P SKP  +V E RKRKGLKE +P
Sbjct: 809  LDPTSKPGQIVCEARKRKGLKENVP 833


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 983

 Score =  151 bits (365), Expect = 1e-37
 Identities = 69/127 (54%), Positives = 89/127 (70%)
 Frame = +2

Query: 14   MDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLN 193
            MDV L  + I+RGGGQIIPT RR  Y+  LTA PRLMEPVY+ E+  P  ++  IY +L 
Sbjct: 805  MDVVLAPEQIYRGGGQIIPTARRVCYSSFLTASPRLMEPVYMVEVHAPADSLPIIYDLLT 864

Query: 194  RRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 373
            RRRGHV ++    G+P+++V+A +PV +S GF  DLR +T GQA  Q VFDHWQV+PGDP
Sbjct: 865  RRRGHVLQDIPRPGSPLYLVRALIPVIDSCGFETDLRVHTQGQAMCQMVFDHWQVVPGDP 924

Query: 374  CEPQSKP 394
             +   KP
Sbjct: 925  LDKSIKP 931


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1000

 Score = 96.7 bits (230), Expect = 3e-21
 Identities = 43/106 (40%), Positives = 64/106 (60%)
 Frame = +2

Query: 56   GQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAG 235
            GQ+I   +  +    L   PRLM  +Y C++Q     +G +YGV+++RRG V +E    G
Sbjct: 841  GQVISVVKESIRHGFLGWSPRLMLAMYSCDVQATSEVLGRVYGVVSKRRGRVIDEEMKEG 900

Query: 236  TPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 373
            TP FIVKA +PV ESFGF  ++   T G A+PQ +F  +++L  +P
Sbjct: 901  TPFFIVKALIPVVESFGFAVEILKRTSGAAYPQLIFHGFEMLDENP 946


>SPBC1306.01c ||SPBC409.22c|translation elongation factor
           G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 770

 Score = 43.6 bits (98), Expect = 3e-05
 Identities = 21/74 (28%), Positives = 40/74 (54%)
 Frame = +2

Query: 101 LTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNES 280
           L A P ++EP+    I  P    GG+ G L++R+  + +         F ++A +P+N  
Sbjct: 668 LQANPMVLEPIMNVSITAPVEHQGGVIGNLDKRKATIVDSD--TDEDEFTLQAEVPLNSM 725

Query: 281 FGFTADLRSNTGGQ 322
           F +++D+R+ T G+
Sbjct: 726 FSYSSDIRALTKGK 739


>SPBC2D10.07c |||mitochondrial inner membrane peptidase complex
           catalytic subunit|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 75  VVGMIWPPPLWMASVWSVTSIDVE 4
           V+  +WP P WM+++  +  IDVE
Sbjct: 136 VIARVWPHPHWMSNI--LNDIDVE 157


>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 232

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 347 HWQVLPGDPCEPQSKPYNVVQETRKRK 427
           H+Q L GDP    + PY  VQ    RK
Sbjct: 78  HFQNLSGDPVSQMATPYPPVQIELMRK 104


>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +2

Query: 65  IPTTRRCLYACLLTAQPRLMEPVYL-CEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTP 241
           IP T RC+ +  + + P+L  P  L   + CP +    +  V+     H F    +   P
Sbjct: 386 IPNTERCILSAFICSPPQLPLPNPLRMYLPCPSLNSTEV-SVITLAPQHSFLNIVINLNP 444

Query: 242 MFIVKAY 262
              +K+Y
Sbjct: 445 ALALKSY 451


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,986,692
Number of Sequences: 5004
Number of extensions: 62004
Number of successful extensions: 123
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)