Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31216
         (733 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0212 - 16460665-16460766,16460971-16461298,16461379-164615...    32   0.54 
03_06_0356 + 33350365-33350707,33351683-33351799,33352663-33352790     29   2.9  
08_01_0170 - 1440908-1441072,1441539-1441581,1442155-1442619,144...    29   3.8  
08_01_0169 - 1396657-1396710,1396801-1396843,1397440-1397904,139...    29   3.8  
08_01_0475 - 4185534-4186047,4187437-4187708,4188032-4188979,419...    29   5.0  
04_03_0149 + 11873854-11874135,11874938-11875033                       29   5.0  

>02_03_0212 -
           16460665-16460766,16460971-16461298,16461379-16461502,
           16461576-16461825,16462185-16462265,16463030-16463114,
           16463200-16463321,16463865-16464672,16464775-16465027,
           16465998-16466796
          Length = 983

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
 Frame = +3

Query: 387 NIDLLAYSGKALGRYYTHCICTPSRAALLTGKYAHRI----GMQGYPLTNSE--DRGLPT 548
           +I LL   G  LG +  H   +P  +  + G Y   +    G++G+ L++    D  + +
Sbjct: 493 SIQLLDLEGNLLGGWIAHS--SPVLSMAVGGSYIFTMAGHGGVRGWNLSSPGPIDNIMRS 550

Query: 549 TEKILPQYLKELGYSTHLVGKWHVGQSRTEY 641
           T        K+  Y   LVG W+VGQ +  Y
Sbjct: 551 TLIEAEPLYKQFEYMKVLVGSWNVGQEKASY 581


>03_06_0356 + 33350365-33350707,33351683-33351799,33352663-33352790
          Length = 195

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 6/119 (5%)
 Frame = -2

Query: 675 RSDCRN-LSALVNIQFVTVQHATFQ-PNESSIPTLSNIVAIFFPSSANLCLHYSLRGIPA 502
           +++C + L AL        + AT + P       L  +VA    S   LC+    R  PA
Sbjct: 31  KAECADKLMALATCLTYVEEKATARAPTRDCCAGLGQVVA---GSKKCLCVLVKDRDEPA 87

Query: 501 FRFDVHIFRSRELPSMVYKYSEYSSVPRPFQSMPKDRCSESI--FGLIHE--NLRRPIP 337
             F +++ R+ +LPS     + +S  P+     P  + +E    +   HE  N  +P P
Sbjct: 88  LGFRINVTRAMDLPSGCSIAATFSDCPKMLNMSPDSKEAEIFKQYAREHESNNATKPAP 146


>08_01_0170 -
           1440908-1441072,1441539-1441581,1442155-1442619,
           1442714-1444149
          Length = 702

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -2

Query: 306 EIFVESKR*LSNSVSRIEWCYTFRTTATYIYFYFPNKSYD 187
           EI V S+    N V  I WC+  RT    +Y  FPN+S D
Sbjct: 426 EIKVISRLRHRNLVQLIGWCHG-RTELLLVYELFPNRSLD 464


>08_01_0169 -
           1396657-1396710,1396801-1396843,1397440-1397904,
           1397999-1399395
          Length = 652

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -2

Query: 306 EIFVESKR*LSNSVSRIEWCYTFRTTATYIYFYFPNKSYD 187
           EI V S+    N V  I WC+  RT    +Y  FPN+S D
Sbjct: 413 EIKVISRLRHRNLVQLIGWCHG-RTELLLVYELFPNRSLD 451


>08_01_0475 -
           4185534-4186047,4187437-4187708,4188032-4188979,
           4190096-4190387,4190486-4191357,4192298-4192354,
           4192391-4192504,4192966-4193595
          Length = 1232

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 291 TQQKSPNIVLIIADDLGWDDVSFHGSDQILTPNIDLLA 404
           T Q+SPN   I+ D +  DD+   G++     ++DL A
Sbjct: 7   TGQQSPNATSIVTDLMDLDDIIVEGNEVQFAMDVDLRA 44


>04_03_0149 + 11873854-11874135,11874938-11875033
          Length = 125

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 515 GVSLHSDSMCIFSGQESCPRWCTNTVSIVAS 423
           GV L  + +C+  G+ SCP    N +S++AS
Sbjct: 68  GVYLIREGVCLIHGKLSCPGPIPNGISLIAS 98


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,418,046
Number of Sequences: 37544
Number of extensions: 387584
Number of successful extensions: 967
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)