Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31215
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    26   3.7  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    26   3.7  
SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||M...    25   4.8  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    25   4.8  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   6.4  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    25   6.4  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   6.4  

>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 317 PSGSAVARAPPTTRFQRHAQPRVSEL 394
           PS S +A APP+ R  R   PR + L
Sbjct: 683 PSASNMANAPPSVRNNRVLNPRGASL 708


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 104 ANSDKIIKSLLFGSRLYFTEITMPRLEN 187
           A   + + S+LFG RLY + I +  LEN
Sbjct: 81  AKQSESLGSVLFGDRLYNSPIEIKMLEN 108


>SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 155

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +2

Query: 263 AGMTPDVAREPQSPTARRPSGSAVARAPPTT 355
           AG T      P +    RP  +AV R  PT+
Sbjct: 34  AGQTKPATTRPMAEARARPGATAVPRRSPTS 64


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -1

Query: 335 PPHCRSASALWATAA--REQHPASCRRPASNKTSCGLMPFHVTLYGSPPL 192
           PP+ + AS L    A  +E + AS ++P+S  T   +  +    Y  PPL
Sbjct: 39  PPYPKVASKLKGVVAGGKENNIASFQKPSSKATRPYIPSYTRLTYSVPPL 88


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = -1

Query: 320 SASALWATAAREQHPASCRRPASNKTSCGLMPFHVTLYGSPPLGGFPGAASLSP 159
           SAS L      +  P   RRP  +  + G      ++  S  LGG PG  + +P
Sbjct: 161 SASILQMNTTLDDIPILLRRPGLSSYTPGPSTSRRSISSSSNLGGNPGLIANNP 214


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +2

Query: 278 DVAREPQSPTARRPSGSAVARAPPTTRFQRH 370
           D     QSPT+  PS      +P T   Q H
Sbjct: 91  DSGNSSQSPTSPHPSNQPAMLSPSTAASQHH 121


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = -3

Query: 150  NRLPNKRLLIILSLFAHFSSYLRYM-----CSPVXSYHAHSLFVREELCQI 13
            NRL ++ L I  SL  HF S L Y        P  + ++ +L ++ EL Q+
Sbjct: 1027 NRLESEILGIFESLLFHFDSILGYQNYWKKVEPFLNLNSLNLLLKSELFQL 1077


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,785,198
Number of Sequences: 5004
Number of extensions: 33997
Number of successful extensions: 88
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)