Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31214
         (335 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.03 |cgs1||cAMP-dependent protein kinase regulatory subun...    24   7.1  
SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51...    23   9.4  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    23   9.4  
SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|c...    23   9.4  

>SPAC8C9.03 |cgs1||cAMP-dependent protein kinase regulatory subunit
           Cgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 412

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 171 QTPNFRYFYLDRFSFRRYLAE 233
           +TPN   + LDR SFRR + E
Sbjct: 240 KTPNNVIYALDRTSFRRIVFE 260


>SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51-b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 291

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 133 TVYKNSFYKIAPFKRQTLDTSI 198
           TVYKN   ++ PF    L+T +
Sbjct: 207 TVYKNGRLRLVPFSGPELETHL 228


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 329  SLIVFLIKSLTGFPTRGDRKPILSKSMHEF 240
            +++ FLIK L+ FP   +  P+  K +  F
Sbjct: 2009 AILTFLIKFLSLFPEPVEENPLSKKGLSLF 2038


>SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 286 VGKPVNDLIKNTIKEA 333
           V KP++DLI+N I E+
Sbjct: 215 VDKPISDLIENDIHES 230


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 912,542
Number of Sequences: 5004
Number of extensions: 11540
Number of successful extensions: 26
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)