Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31214
         (335 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0899 - 7085140-7085539,7086777-7086868,7088098-7088187           31   0.31 
09_04_0680 - 19401891-19402049,19402556-19402928,19403385-194034...    27   2.9  
08_02_1395 - 26737972-26738418,26738505-26738738,26738887-267391...    27   2.9  

>01_01_0899 - 7085140-7085539,7086777-7086868,7088098-7088187
          Length = 193

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +3

Query: 180 NFRYFYLDRFSFRRYLAELFKFV 248
           ++ Y YLDRF  RRY  + FKFV
Sbjct: 59  HYWYEYLDRFILRRYQPKTFKFV 81


>09_04_0680 -
           19401891-19402049,19402556-19402928,19403385-19403421,
           19403587-19403667,19405215-19405280,19407453-19407948,
           19408050-19408283,19408473-19408772,19409241-19409423,
           19410412-19410414
          Length = 643

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +1

Query: 268 GFLSPRVGKPVNDL 309
           GF+SP +GKPV DL
Sbjct: 299 GFMSPNMGKPVGDL 312


>08_02_1395 -
           26737972-26738418,26738505-26738738,26738887-26739183,
           26739399-26739581,26739778-26739834,26739960-26740016,
           26740228-26740322,26740714-26740765,26740821-26740910
          Length = 503

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +1

Query: 268 GFLSPRVGKPVNDL 309
           GF+SP +GKPV DL
Sbjct: 414 GFMSPNMGKPVGDL 427


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,895,819
Number of Sequences: 37544
Number of extensions: 55695
Number of successful extensions: 78
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)