Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31213
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...   162   4e-41
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    27   2.1  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    25   6.5  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    25   8.6  

>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score =  162 bits (393), Expect = 4e-41
 Identities = 74/186 (39%), Positives = 108/186 (58%)
 Frame = +3

Query: 3   KTVFVAFFQGEQLKSRIKKVCTGFHASLYPCPPSNTERQDMVKGVRTRLEDLNMVLNQTR 182
           KT+F+    G Q+  RI+K+     A+L+P       R   ++     + DLN VL  TR
Sbjct: 221 KTIFLVIAHGTQILLRIRKISESLGATLFPVEEDAPGRTSQIQQANVSISDLNAVLENTR 280

Query: 183 DHRQRVLASVAKELTSWTIMVRKMKAIYHTLNLFNMDVTKKCLIGECWVPTADLPNVQKA 362
                 L  +A+ +++W  ++ K K ++  +NLFN D   KCLI E W PTA+LP VQK 
Sbjct: 281 SALYTELTFIAEHISAWEAVLHKDKTVFQVMNLFNYDQNHKCLIAEGWCPTANLPMVQKT 340

Query: 363 LADGSNACGSSIPSFLNCIETDEEPPTFNRTNKFTRGXXNLIDAYGVASYRECNPALYTI 542
           L + S+   S  P+ LN + T E+PPT+ R NKFT G  ++ID+YG+A+YRE N  +  I
Sbjct: 341 LRNISDLTDSQAPTILNVVHTSEQPPTYFRVNKFTEGFQSIIDSYGIATYREVNHGIVAI 400

Query: 543 ITFPXL 560
           +TFP L
Sbjct: 401 VTFPFL 406



 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 16/18 (88%), Positives = 17/18 (94%)
 Frame = +1

Query: 553 PFLFAVMFGDLGHGCIMA 606
           PFLFA+MFGDLGHG IMA
Sbjct: 404 PFLFAIMFGDLGHGAIMA 421


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +1

Query: 106 IPNDRTWSRESGPDSKTLTWS*TKPATTG 192
           +PN  T S +SGPDS T TW    P ++G
Sbjct: 526 LPNLSTLSLQSGPDS-TATWHPEFPNSSG 553


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 256 FIFLTIMVQLVSSLATLASTRCLWSRVWFKTMLRSSS 146
           F F   MV L  +   ++   CL+ R+W +  L +SS
Sbjct: 427 FFFADQMVSLTYACGNISLFFCLYKRLWRQPQLCNSS 463


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 16/62 (25%), Positives = 27/62 (43%)
 Frame = +3

Query: 156 LNMVLNQTRDHRQRVLASVAKELTSWTIMVRKMKAIYHTLNLFNMDVTKKCLIGECWVPT 335
           LN  + QT+    R L     ++    + V+KM A Y   N   + VT++ +  + W   
Sbjct: 164 LNSYMRQTKKMTGRELDKYNLKIRQAALAVKKMDAEYRETNELLLTVTREWI--DRWTEV 221

Query: 336 AD 341
            D
Sbjct: 222 CD 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,348,657
Number of Sequences: 5004
Number of extensions: 45580
Number of successful extensions: 108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)