Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31213
(612 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0114 + 5431578-5431724,5432753-5432797,5433572-5433691,543... 167 6e-42
03_02_0381 + 7951360-7951509,7952125-7952169,7952625-7952744,795... 166 1e-41
01_06_1250 + 35726115-35726255,35727435-35727479,35728570-357286... 162 2e-40
11_08_0021 + 27716298-27716478,27717137-27717309,27717408-277175... 34 0.077
11_08_0035 - 27838495-27838655,27838750-27838897,27838987-278391... 31 0.54
01_06_1472 - 37609732-37609851,37609883-37610104,37610542-376109... 29 2.9
05_05_0277 + 23780779-23781103,23781954-23782363,23782487-237830... 29 3.8
05_03_0312 - 12172565-12172645,12172920-12172982,12173077-121731... 29 3.8
02_05_0490 + 29456825-29457499,29458771-29459057,29460922-294610... 28 5.1
11_08_0092 - 28307180-28307380,28307471-28307936,28308008-283081... 28 6.7
03_05_0705 - 26965352-26965542,26965732-26965763,26966141-269662... 28 6.7
>10_02_0114 +
5431578-5431724,5432753-5432797,5433572-5433691,
5433773-5433880,5434900-5435073,5435366-5435503,
5435879-5435986,5436131-5436238,5436340-5436488,
5437594-5437747,5437980-5438140,5438221-5438427,
5438575-5438758,5438846-5438929,5439023-5439222,
5439314-5439373,5439461-5439665
Length = 783
Score = 167 bits (406), Expect = 6e-42
Identities = 74/186 (39%), Positives = 109/186 (58%)
Frame = +3
Query: 3 KTVFVAFFQGEQLKSRIKKVCTGFHASLYPCPPSNTERQDMVKGVRTRLEDLNMVLNQTR 182
K FV F+ GE+ KS+I K+C F A+ YP P ++ ++ V ++ +L +
Sbjct: 201 KNAFVIFYSGERAKSKIVKICDAFGANRYPFPEDLGKQLQTIQEVSGKISELKATIEIGL 260
Query: 183 DHRQRVLASVAKELTSWTIMVRKMKAIYHTLNLFNMDVTKKCLIGECWVPTADLPNVQKA 362
HR +L +++ E W +V+K KAIYHTLN+ ++DVTKKCL+ E W P +Q A
Sbjct: 261 AHRDSILKNISSEFEQWNTLVKKEKAIYHTLNMLSLDVTKKCLVAEGWSPVFATSQIQDA 320
Query: 363 LADGSNACGSSIPSFLNCIETDEEPPTFNRTNKFTRGXXNLIDAYGVASYRECNPALYTI 542
L + S + S + T E PPTF +TNKFT ++DAYG+A Y+E NP ++TI
Sbjct: 321 LQRATVDSKSQVGSIFQVLNTQESPPTFFQTNKFTSAFQEIVDAYGIAKYQEANPGVFTI 380
Query: 543 ITFPXL 560
+TFP L
Sbjct: 381 VTFPFL 386
Score = 33.5 bits (73), Expect = 0.13
Identities = 13/18 (72%), Positives = 16/18 (88%), Gaps = 1/18 (5%)
Frame = +1
Query: 553 PFLFAVMFGDLGHG-CIM 603
PFLFA+MFGD GHG C++
Sbjct: 384 PFLFAIMFGDWGHGICLL 401
>03_02_0381 +
7951360-7951509,7952125-7952169,7952625-7952744,
7952823-7952930,7953256-7953363,7953635-7953808,
7954054-7954191,7954643-7954750,7954866-7954973,
7955086-7955234,7955816-7955969,7956143-7956303,
7956391-7956597,7956703-7956886,7956974-7957057,
7957146-7957345,7957476-7957535,7957631-7957835
Length = 820
Score = 166 bits (403), Expect = 1e-41
Identities = 72/186 (38%), Positives = 109/186 (58%)
Frame = +3
Query: 3 KTVFVAFFQGEQLKSRIKKVCTGFHASLYPCPPSNTERQDMVKGVRTRLEDLNMVLNQTR 182
K FV F+ G++ K++I K+C F+A+ YP P + V+ V ++ +L ++
Sbjct: 238 KNAFVIFYSGDRAKAKILKICDAFNANRYPFPEDVARQLHAVQEVSAKISELKATIDMGL 297
Query: 183 DHRQRVLASVAKELTSWTIMVRKMKAIYHTLNLFNMDVTKKCLIGECWVPTADLPNVQKA 362
HR +L ++A E +W + K K IYHTLN+ ++DVTKKCL+GE W P +Q A
Sbjct: 298 AHRDNILKNIASEFENWNRLANKEKIIYHTLNMLSVDVTKKCLVGEGWSPVFATTQIQDA 357
Query: 363 LADGSNACGSSIPSFLNCIETDEEPPTFNRTNKFTRGXXNLIDAYGVASYRECNPALYTI 542
L + S + S + T E PPT+ +TNKFT ++DAYG+A Y+E NP ++TI
Sbjct: 358 LQRATLDSKSQVGSIFQVLNTTESPPTYFQTNKFTSAFQEIVDAYGIAKYQEANPGVFTI 417
Query: 543 ITFPXL 560
+TFP L
Sbjct: 418 VTFPFL 423
Score = 34.7 bits (76), Expect = 0.058
Identities = 15/18 (83%), Positives = 16/18 (88%), Gaps = 1/18 (5%)
Frame = +1
Query: 553 PFLFAVMFGDLGHG-CIM 603
PFLFAVMFGD GHG CI+
Sbjct: 421 PFLFAVMFGDWGHGICIL 438
>01_06_1250 +
35726115-35726255,35727435-35727479,35728570-35728692,
35728804-35728911,35729247-35729360,35729440-35729613,
35729881-35729976,35730165-35730272,35730389-35730496,
35730595-35730743,35731255-35731408,35732487-35732647,
35733739-35733945,35733968-35734025,35734058-35734222,
35734305-35734388,35735670-35735863,35735952-35736011,
35736203-35736407
Length = 817
Score = 162 bits (393), Expect = 2e-40
Identities = 74/177 (41%), Positives = 107/177 (60%)
Frame = +3
Query: 30 GEQLKSRIKKVCTGFHASLYPCPPSNTERQDMVKGVRTRLEDLNMVLNQTRDHRQRVLAS 209
GE+ K++I K+C F AS YP P +++ + + V RL DL L+ HR + L S
Sbjct: 233 GEEAKAKILKICGSFGASCYPVPEEMVKQRQIFREVSGRLADLEATLDAGIQHRNKALES 292
Query: 210 VAKELTSWTIMVRKMKAIYHTLNLFNMDVTKKCLIGECWVPTADLPNVQKALADGSNACG 389
V +L WTIMV+K KA+Y TLN+ N DVTKKCL+GE W P ++ L +
Sbjct: 293 VGSQLWRWTIMVKKEKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKSQIKDVLQRATLHSN 352
Query: 390 SSIPSFLNCIETDEEPPTFNRTNKFTRGXXNLIDAYGVASYRECNPALYTIITFPXL 560
S + + ++T + PPT+ +T+KFT ++DAYG+A Y E NPA+Y++ITFP L
Sbjct: 353 SQVGIIFHEMDTIDSPPTYFQTDKFTNAFQEIVDAYGIARYEEANPAVYSVITFPFL 409
Score = 33.9 bits (74), Expect = 0.10
Identities = 14/18 (77%), Positives = 16/18 (88%), Gaps = 1/18 (5%)
Frame = +1
Query: 553 PFLFAVMFGDLGHG-CIM 603
PFLFAVMFGD GHG C++
Sbjct: 407 PFLFAVMFGDWGHGICLL 424
>11_08_0021 +
27716298-27716478,27717137-27717309,27717408-27717578,
27717967-27718077,27718168-27718245,27718642-27718832,
27718873-27718958,27719202-27719206,27719301-27719378,
27719465-27719527,27719597-27719680,27720049-27720209,
27720377-27720416,27720774-27720893,27720993-27721211,
27721927-27722100,27722202-27722883,27722986-27723185,
27723269-27723407,27723502-27723677
Length = 1043
Score = 34.3 bits (75), Expect = 0.077
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = -2
Query: 437 RLLVSLDAVQERRDRTAARVRTISQCLLYIG*ISSRHPAFTDEAL 303
R+L SLD + DR R++T +CL+ + + +RH DE L
Sbjct: 260 RILESLDFNSQYEDRATTRLKTAKRCLIILCTLVTRHRKHADEIL 304
>11_08_0035 -
27838495-27838655,27838750-27838897,27838987-27839192,
27839291-27839972,27840074-27840247,27840963-27841181,
27841281-27841400,27841540-27841680,27841762-27841801,
27841969-27842129,27842506-27842589,27842659-27842721,
27842808-27842885,27842980-27842984,27843228-27843313,
27843354-27843544,27844089-27844166,27844255-27844365,
27844757-27844927,27845026-27845198,27845748-27845928
Length = 1090
Score = 31.5 bits (68), Expect = 0.54
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -2
Query: 437 RLLVSLDAVQERRDRTAARVRTISQCLLYIG*ISSRHPAFTDEAL 303
R+L SLD + D R++T +CL+ + + +RH DE L
Sbjct: 260 RILESLDFNSQYEDGATTRLKTAKRCLIILCTLVTRHRKHADEIL 304
>01_06_1472 -
37609732-37609851,37609883-37610104,37610542-37610922,
37612583-37612816,37613589-37613738,37613831-37614016,
37615058-37615120
Length = 451
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +3
Query: 420 ETDEEPPTFNRTNKFTRGXXNLIDAYGVASYRECNPALY 536
+TD + PT F LI + G + ECNP LY
Sbjct: 327 KTDAQAPTVEDELSFLMHTLTLISSGGCRFHLECNPILY 365
>05_05_0277 +
23780779-23781103,23781954-23782363,23782487-23783016,
23785904-23785991
Length = 450
Score = 28.7 bits (61), Expect = 3.8
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = +3
Query: 126 VKGVRTRLEDL-NMVLNQTRDHRQRV-LASVAKELTSWTIMVRKMKAIYHTLNLFNM 290
+ R +E L N V N+TRD+ Q V L+S A EL+S +R + A H L F++
Sbjct: 218 IVAARDDMEGLPNFVFNRTRDNAQEVTLSSPALELSS---PLRGISAFEHVLLEFDL 271
>05_03_0312 -
12172565-12172645,12172920-12172982,12173077-12173152,
12174629-12174773,12175121-12175208
Length = 150
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/28 (35%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +2
Query: 8 RVRCVLPRRTAK-VSHQESVHRFPRLAV 88
R C++ RR K ++H S+H+FP++ +
Sbjct: 99 RQTCMIDRRKKKDLNHDRSIHQFPKMVI 126
>02_05_0490 + 29456825-29457499,29458771-29459057,29460922-29461039,
29461451-29461972,29462058-29462170,29463033-29463053,
29463726-29463960,29464218-29464381,29464695-29464776,
29465077-29465166,29465625-29465858,29466347-29466418,
29466857-29467000,29467573-29467659,29467940-29468098,
29469216-29469476,29469789-29469836
Length = 1103
Score = 28.3 bits (60), Expect = 5.1
Identities = 23/101 (22%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Frame = +3
Query: 123 MVKGVRTRLEDLNMVLNQTRDHRQRVLASVAKELTSWTIMVRKM-KAIYHTLNLFNMDVT 299
M++ V TR+E ++L + ++H + + W+ + RK+ K + + L ++
Sbjct: 776 MLEAVGTRVEKEELLL-KCKNHELNAVGA-----DEWSPLARKLLKVLPYLLTPSQLNAV 829
Query: 300 KKCLIGECWVPTADLPNVQKALADGSNACGSSIPSFLNCIE 422
K+ + W +P L G CG ++ +FL C+E
Sbjct: 830 KEII----WDLRRPVP--MNRLLQGDVGCGKTVVAFLACME 864
>11_08_0092 -
28307180-28307380,28307471-28307936,28308008-28308117,
28308206-28308493,28309024-28309059
Length = 366
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +1
Query: 109 PNDRTWSRESGPDSKTLTWS*TKPATTGNVCLQVLLRS*PAGP*W 243
P+ R R+ P S + + + T PA QVLL S P GP W
Sbjct: 208 PHQRAAPRDVQPPSPSSSPATTSPAHPRRAHGQVLLGSHPRGPHW 252
>03_05_0705 -
26965352-26965542,26965732-26965763,26966141-26966235,
26966737-26966810,26966894-26967029,26967137-26967200,
26967285-26967350,26967445-26967587,26969314-26969407,
26969779-26969902,26970016-26970193,26970273-26970395,
26970884-26970955,26971032-26971139,26972511-26972627,
26972757-26972889,26973209-26973299,26974642-26974722,
26975342-26975421,26975500-26975705,26977417-26977893
Length = 894
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 426 QSRCSSGTTGSNCRTRSNH 370
Q+R GT G++CR R+NH
Sbjct: 127 QARPGFGTVGTSCRVRANH 145
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,055,800
Number of Sequences: 37544
Number of extensions: 371216
Number of successful extensions: 1085
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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