Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31204
(646 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch... 100 4e-22
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha... 36 0.004
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p... 32 0.081
SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit S18... 32 0.081
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ... 27 3.1
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 27 3.1
SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomy... 26 4.0
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 25 7.1
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 25 9.3
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 9.3
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 25 9.3
>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 474
Score = 99.5 bits (237), Expect = 4e-22
Identities = 47/104 (45%), Positives = 66/104 (63%), Gaps = 1/104 (0%)
Frame = +1
Query: 25 HEPDKPNIQT-AIPGPKSQQLLKELNTLQQAGAVQLFADYDKSIGNYFFDADGNAFLDAF 201
+EP P+I+T IPGPK + +E++ AV+ DY+KSIGNY D DGN LD +
Sbjct: 16 NEPQGPSIKTETIPGPKGKAAAEEMSKYHDISAVKFPVDYEKSIGNYLVDLDGNVLLDVY 75
Query: 202 TQISSLPVGYNHPELLSAFEDQHNLKSLINRPALGVFPSA*LAR 333
+QI+++P+GYN+P LL A + L+NRPALG +P AR
Sbjct: 76 SQIATIPIGYNNPTLLKAAKSDEVATILMNRPALGNYPPKEWAR 119
Score = 55.2 bits (127), Expect = 8e-09
Identities = 23/31 (74%), Positives = 25/31 (80%)
Frame = +3
Query: 552 FEGSFHGRTFGALSTTRSKPLHKLDCPAFDW 644
F SFHGR FG+LSTTRSKP+HKL PAF W
Sbjct: 192 FRHSFHGRLFGSLSTTRSKPVHKLGMPAFPW 222
Score = 47.2 bits (107), Expect = 2e-06
Identities = 24/77 (31%), Positives = 38/77 (49%)
Frame = +2
Query: 323 DWPEKLKNVLLSVGPVGLDNIATMMCGSCSIENAYKTVFIWYQTRERGGKLDFTPEEIDS 502
+W + P G + M GS + E AYK + + + D+T EE +S
Sbjct: 116 EWARVAYEGAIKYAPKGQKYVYFQMSGSDANEIAYKLAMLHHFNNKPRPTGDYTAEENES 175
Query: 503 CMLNQVPGSPKLSILSF 553
C+ N PGSP++++LSF
Sbjct: 176 CLNNAAPGSPEVAVLSF 192
>SPCC777.09c |arg1||acetylornithine
aminotransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 441
Score = 36.3 bits (80), Expect = 0.004
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 11/80 (13%)
Frame = +1
Query: 97 NTLQQAGA--VQLFADYD----KSIGNYFFDADGNAFLDAFTQISSLPVGYNHPELLSAF 258
N +++ GA + ++A Y K G+Y FD +G ++D + ++ +G+ HPE+
Sbjct: 38 NIIKKEGANIISVYARYPVVAAKGEGSYLFDKEGRKYIDFTSGVAVTSLGHAHPEVARLA 97
Query: 259 EDQ-----HNLKSLINRPAL 303
DQ H+ N PA+
Sbjct: 98 ADQCSKLVHSSNLFYNEPAI 117
Score = 29.1 bits (62), Expect = 0.57
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 540 QYYHFEGSFHGRTFGALSTTRSKPLHK 620
Q +F SFHGR+ G+LS T + P +K
Sbjct: 170 QIVYFNNSFHGRSLGSLSIT-ANPKYK 195
>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 438
Score = 31.9 bits (69), Expect = 0.081
Identities = 14/52 (26%), Positives = 29/52 (55%)
Frame = +1
Query: 139 YDKSIGNYFFDADGNAFLDAFTQISSLPVGYNHPELLSAFEDQHNLKSLINR 294
+ K+ G +D +G +LD + S++ G+ HP+++ A +Q +L +R
Sbjct: 35 FSKAKGAKVWDPEGREYLDFLSAYSAVNQGHCHPKIIEALVEQAQRVTLSSR 86
>SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit
S18|Schizosaccharomyces pombe|chr 1|||Manual
Length = 223
Score = 31.9 bits (69), Expect = 0.081
Identities = 13/39 (33%), Positives = 27/39 (69%)
Frame = -3
Query: 479 NPVFLRVPGSDTI*IQFYTHSQ*NRSHTSLSLCCPTQRV 363
NP+ + G+DTI + FY H++ +++T ++LC P +++
Sbjct: 93 NPI---MQGTDTIPMPFYLHAKCLKNNTHITLCSPERKI 128
>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 622
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/47 (21%), Positives = 23/47 (48%)
Frame = +1
Query: 22 QHEPDKPNIQTAIPGPKSQQLLKELNTLQQAGAVQLFADYDKSIGNY 162
+H+ + ++QT P P LLK + + ++ + + D + + Y
Sbjct: 93 EHDDSQDSLQTLAPSPSYVPLLKVIGSSEEVNSNLVLTDLETNTDGY 139
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Frame = -1
Query: 274 DCVDLQMRLIIQDDYTPREEKIFV*-----KHLGMHYHRRQRNNFQYFC 143
+ +D R+I + D + KIF K LG+H R+ +N+++Y C
Sbjct: 773 EAMDKASRVISEADEEAMKNKIFKIEGTQRKILGIHSRRKLKNSYEYEC 821
>SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 151
Score = 26.2 bits (55), Expect = 4.0
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 362 GPVGLDNIATMMCGSCSIENAYKTVFIWYQTRE 460
G G+D + GS SIE+A + + +W+Q E
Sbjct: 105 GDYGIDLGRNVCHGSDSIESANREIKLWFQPSE 137
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 13 SVLQHEPDKPNIQTAIPGPKSQQLLKE 93
SV Q +P PN++ +P P + + L+E
Sbjct: 393 SVSQSQPASPNLRFNMPAPLATRFLQE 419
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 25.0 bits (52), Expect = 9.3
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = -2
Query: 561 FPQNDNIDSLGDPGT*FNIQLSISSGVKSSFPPRSRV*YHMNTVLYAFSIEQEPHIIVAM 382
FPQ+ + L P FNI+L + + PR+ +LY S++ E +VA
Sbjct: 837 FPQDPEVPFLAFPDFPFNIKLDLRESI-IGLNPRT---LEAKLLLYLKSLDVEIDALVA- 891
Query: 381 LSNP 370
SNP
Sbjct: 892 -SNP 894
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -1
Query: 526 SRNLIQHTTVNFFGCEIQFSSAFPGLIPYEY 434
S N+ H + F + SA PG +PY++
Sbjct: 317 SPNVSSHPHMAFLPATVPTHSAPPGFVPYDF 347
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 25.0 bits (52), Expect = 9.3
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +2
Query: 356 SVGPVGLDNIATMMCGSCSIENAYKTVFIWYQTRERGGKL 475
S+GPVGLD + G ++ N T+ GK+
Sbjct: 40 SLGPVGLDKMLVDDIGDVTVTNDGATILSLLDVEHPAGKV 79
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,854,377
Number of Sequences: 5004
Number of extensions: 61950
Number of successful extensions: 177
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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