Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31201
         (525 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.07 |ilv1||acetolactate synthase catalytic subunit|Schiz...    29   0.56 
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    27   2.3  
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|...    26   4.0  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    25   5.2  
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    25   9.1  

>SPBP35G2.07 |ilv1||acetolactate synthase catalytic
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 669

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 19/42 (45%), Positives = 25/42 (59%)
 Frame = -1

Query: 144 YNQEIETKKRFLDLELPQAVNIERSGFKSSNSSSDRIIKLKN 19
           Y +EI  +KRFL+L    AV    +GF    S++ RI KLKN
Sbjct: 19  YGREIALQKRFLNLNSCSAVRRYGTGF----SNNLRIKKLKN 56


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 355  FYIDFYICRLLTWLFSPMVLI 417
            F  DF++C LL +L  P++LI
Sbjct: 1775 FAADFFLCHLLLFLMLPVLLI 1795


>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 251 HYQTSQDHPPV*SQDLLKGSL 313
           HY  + DH P+ S D  K SL
Sbjct: 11  HYDANDDHTPIYSVDFQKNSL 31


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +1

Query: 232 DLALIRSLPNFAGSSPSLIS 291
           D +L+ ++P+ A S+PSLIS
Sbjct: 74  DASLLATMPSVASSNPSLIS 93


>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 483 RDSVYYINEILQLQLRLHNQLGN 415
           R+S YY   I   Q++++NQ+GN
Sbjct: 56  RESGYYEKAIRNGQVKVNNQIGN 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,143,223
Number of Sequences: 5004
Number of extensions: 42296
Number of successful extensions: 91
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)