Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31201
         (525 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U22832-1|AAA64507.1|  293|Caenorhabditis elegans Hypothetical pr...    34   0.072
Z68000-4|CAA91972.4| 1342|Caenorhabditis elegans Hypothetical pr...    28   3.6  
Z50739-4|CAA90605.4| 1342|Caenorhabditis elegans Hypothetical pr...    28   3.6  

>U22832-1|AAA64507.1|  293|Caenorhabditis elegans Hypothetical
           protein C09F5.2 protein.
          Length = 293

 Score = 33.9 bits (74), Expect = 0.072
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -1

Query: 204 VFVIQRAACHINELFHSTGVYNQEIETKKRFLDLE 100
           VFV+     H N + HS G +  +++T K+FLD+E
Sbjct: 243 VFVVFSYLIHKNRVSHSLGRFKHKVDTMKQFLDVE 277


>Z68000-4|CAA91972.4| 1342|Caenorhabditis elegans Hypothetical
           protein F13D2.1 protein.
          Length = 1342

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -1

Query: 162 FHSTGVYNQEIETKKRFLDLELPQAVNIERSGFKSSNSSS 43
           FH  GV +Q+   ++ F +  L  A+ +ER+G K   ++S
Sbjct: 381 FHDPGVVSQKSRIRQHFPETWLFDAIVLERNGTKKITATS 420


>Z50739-4|CAA90605.4| 1342|Caenorhabditis elegans Hypothetical
           protein F13D2.1 protein.
          Length = 1342

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -1

Query: 162 FHSTGVYNQEIETKKRFLDLELPQAVNIERSGFKSSNSSS 43
           FH  GV +Q+   ++ F +  L  A+ +ER+G K   ++S
Sbjct: 381 FHDPGVVSQKSRIRQHFPETWLFDAIVLERNGTKKITATS 420


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,723,017
Number of Sequences: 27780
Number of extensions: 233932
Number of successful extensions: 410
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)