Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31196
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    33   0.049
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    28   1.4  
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   1.8  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.8  
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    27   1.8  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   2.4  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    27   3.2  
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   4.3  
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    26   4.3  
SPAC4H3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   5.6  
SPAC4G9.02 |||ribonuclease H2 complex subunit|Schizosaccharomyce...    25   7.5  
SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida...    25   7.5  
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    25   7.5  
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    25   7.5  
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc...    25   9.9  
SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyce...    25   9.9  

>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 32.7 bits (71), Expect = 0.049
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -2

Query: 504 QYLPPRNPSSPPVWLFGTTATASKENVSNLLTSLTVAMTLLSFGC 370
           +Y  PR P   PV+LF       +EN+  L  SL ++++LL   C
Sbjct: 112 EYTLPRPPQLTPVFLFVVDVCQDEENLQALKDSLIISLSLLPPEC 156


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -1

Query: 526 GLVESGMAVSTTTQPIKSSGVVIRNYSHSFEGERLQSTDVSDGCDDPIVVWLL 368
           G+ ES M +     P+++SG    NYS+  E      T+ +D   D +  W L
Sbjct: 536 GINESNMPMLQNGLPLRTSGDHPSNYSNLIENSSTSDTNNADNGMDVMGNWQL 588


>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/40 (42%), Positives = 19/40 (47%)
 Frame = -3

Query: 548 LLGTISGRTGRIRDGSIYHHATHQVLRCGYSELQPQLRRR 429
           LL T + R  R  DG   H A  Q LR  YS+  P   RR
Sbjct: 102 LLKTFACRIERANDGD--HQAIWQTLRYAYSQTGPLRHRR 139


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 330 ASSPRRSYFYYHSSSQTTIG-SSQPSETSVDWRRSPSKLWL 449
           +SS   S   YHSSS TT G SS  S  S  +R  PS + L
Sbjct: 147 SSSVPSSSSSYHSSSMTTSGLSSSASIVSSTYRDGPSIITL 187


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 11/101 (10%)
 Frame = -2

Query: 660 RRRSFNVSTSISSAVFLFVS-TSGQRSVRAATSSKVLSTLGDHLRSDWSNPGWQYLPPRN 484
           R  SFNV   I + +   +S  +   S    T S +     ++  S W+N GW ++    
Sbjct: 197 RFSSFNVVFQICTILIFIISLAASSTSETRNTGSYIFGNFENY--SGWTNMGWSFI---L 251

Query: 483 PSSPPVWL---FGTTAT-------ASKENVSNLLTSLTVAM 391
             + PVW+   F + AT       ASK     +++SLTV++
Sbjct: 252 CFTTPVWVLSGFESCATIVEEAKNASKAAPIAIISSLTVSL 292


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 26/84 (30%), Positives = 34/84 (40%)
 Frame = -2

Query: 639 STSISSAVFLFVSTSGQRSVRAATSSKVLSTLGDHLRSDWSNPGWQYLPPRNPSSPPVWL 460
           S+SISS V      +   S  AATS+   S+   +  S         LP   PSS P  L
Sbjct: 242 SSSISSTVSSSTPLTSSNSTTAATSASATSSSAQYNTS-------SLLPSSTPSSTP--L 292

Query: 459 FGTTATASKENVSNLLTSLTVAMT 388
               +T +    S  LTS+    T
Sbjct: 293 SSANSTTATSASSTPLTSVNSTTT 316


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
 Frame = -2

Query: 603 STSGQRSVRAATSSKVLSTLGDHLRSDWSNPGWQYLPPRNPSSP----PVWLFGTTATAS 436
           S S + +   A  +  L   GD L  +W    +Q++    PSSP     +WL   T  + 
Sbjct: 755 SKSNENTKLTAKENDRLLIQGDLLVCEWPEKSYQFVFSVAPSSPQMGRSLWLESKTILSD 814

Query: 435 KENVSNLLTSLTV 397
           K++ S    ++T+
Sbjct: 815 KKDDSEDSRTITL 827


>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 416

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +2

Query: 374 PNDNRVIATVRDVSRLETFSFEAVAVVPNNHTGGLDGLRGGRY 502
           P +N        V+  ETFS   V V+P   T   DG+RG  Y
Sbjct: 158 PKNNPTTVYSGTVATTETFSSSTVVVIP---TAICDGVRGLEY 197


>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 416

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +2

Query: 374 PNDNRVIATVRDVSRLETFSFEAVAVVPNNHTGGLDGLRGGRY 502
           P +N        V+  ETFS   V V+P   T   DG+RG  Y
Sbjct: 158 PKNNPTTVYSGTVATTETFSSSTVVVIP---TAICDGVRGLEY 197


>SPAC4H3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = -1

Query: 577 RSHFFQSLEHSWGPSQ---VGLVESGMAVSTTTQPIKSSGVVIRNYSHSFEGE 428
           R+  ++ LE +   +Q   +GL + G+ V   T+ +      IRNY  S   E
Sbjct: 15  RAQLYKELEDALNANQEKKIGLEQMGIIVQLVTEGLNEVSSDIRNYQASLTKE 67


>SPAC4G9.02 |||ribonuclease H2 complex subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 333 SSPRRSYFYYHSSSQTTIGSSQPSETSVD 419
           S+P +S  YYHS+    I  SQP    VD
Sbjct: 42  SNPAKSN-YYHSTVTDDISKSQPYRLGVD 69


>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
           imidazole acetol phosphate transaminase
           His3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 245 CLNSGIVTTKMTKCTRDDFGHG 180
           CL   I+  +  +C RDDF  G
Sbjct: 7   CLRKNILELQPYRCARDDFSEG 28


>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 171 NTRDKMRSFANILTGTVQEFPQKENKLFKYIKDF 70
           NT +   S  + LT   ++    ENKLF+Y+  +
Sbjct: 435 NTEELANSIHDALTMPEKQREANENKLFRYVNKY 468


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
 Frame = -2

Query: 660 RRRSFNVSTSISSAVFLFVSTSGQRSVRAATSSKVLSTLGDHLRSDWSNPGWQY-LPPRN 484
           R  S N+S S SS+     S S  ++  A        T      +   N   Q  +PP  
Sbjct: 119 RSLSNNISLSQSSSSPATSSFSDPKAFSAGVPKFTSDTSSTVSSTPSLNHSLQNSMPPST 178

Query: 483 PSSPPVW 463
           P+ PPVW
Sbjct: 179 PTPPPVW 185


>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
 Frame = -2

Query: 624 SAVFLFVSTSGQRSVRAATSSKVLSTLGDHLRSDWSNPGWQYLPPRNPSSPPVWL---FG 454
           S + +    +G  S    + S +     ++  S WSN GW ++      + PVW+   F 
Sbjct: 211 SIILIIALAAGSDSTTRNSGSFIFGDFTNY--SGWSNMGWAFI---LSFTTPVWVVSGFE 265

Query: 453 TTATASKENVS 421
           ++A  ++E+ +
Sbjct: 266 SSAAVAEESTN 276


>SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 395

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = +2

Query: 557 TLEEVAARTDRCPDVDTNRKTAEEI 631
           T EEV   T RCP   T  K AE I
Sbjct: 197 TREEVDKTTVRCPHAATAAKMAERI 221


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,868,613
Number of Sequences: 5004
Number of extensions: 60330
Number of successful extensions: 202
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)