Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31196
         (670 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100305-1|AAC68918.1|  197|Caenorhabditis elegans Hypothetical ...    29   3.0  
AC006608-11|AAF39761.1|  360|Caenorhabditis elegans Hypothetical...    29   3.0  
U42841-5|AAM97959.1|  657|Caenorhabditis elegans Gex interacting...    28   5.2  
U42841-4|AAK77640.1|  706|Caenorhabditis elegans Gex interacting...    28   5.2  
U42841-3|AAK77638.1|  663|Caenorhabditis elegans Gex interacting...    28   5.2  
U42841-2|AAK77639.1|  603|Caenorhabditis elegans Gex interacting...    28   5.2  
U42841-1|AAM97958.1|  716|Caenorhabditis elegans Gex interacting...    28   5.2  
AC024200-1|AAF35996.1|  196|Caenorhabditis elegans Hypothetical ...    28   5.2  

>AF100305-1|AAC68918.1|  197|Caenorhabditis elegans Hypothetical
           protein W04B5.4 protein.
          Length = 197

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +3

Query: 540 PQECSRLWKKWL-RAPTAAPTWTQ 608
           P++ S+LW  WL R  +A P WT+
Sbjct: 53  PKQASKLWMAWLYRDTSAEPKWTK 76


>AC006608-11|AAF39761.1|  360|Caenorhabditis elegans Hypothetical
           protein C15F1.1 protein.
          Length = 360

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = -2

Query: 234 WHSDDEDDKMHTR*LWAWLAPNTRD-KMRSFANILTGTVQEFPQKENKLFKYIKDFNESL 58
           W  +D+D+ +H+   +  + PNT++  + +  N    TV+E P   N++   +KD     
Sbjct: 254 WSINDKDE-LHSEYGYISVKPNTKEVALTTVMNNGFVTVEEGPVNGNQIRFRLKDIGRIS 312

Query: 57  NSRPRPTH 34
            SR  P H
Sbjct: 313 FSRDLPVH 320


>U42841-5|AAM97959.1|  657|Caenorhabditis elegans Gex interacting
           protein protein16, isoform k protein.
          Length = 657

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = -2

Query: 663 LRRRSFNVSTS--ISSAVFLFVSTSGQRSVRAATSSKVLSTLGDHLRSDWSNPGWQYLPP 490
           L +R F  S S  I+++ +L  S    R + A+   + L    +     W+ PGW   P 
Sbjct: 128 LEQRRFRSSESRPITTSNYLAESVDRHREMEASRLREYLKAKENEANQPWNKPGWPG-PK 186

Query: 489 RNPSS 475
           +N  S
Sbjct: 187 KNDES 191


>U42841-4|AAK77640.1|  706|Caenorhabditis elegans Gex interacting
           protein protein16, isoform c protein.
          Length = 706

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = -2

Query: 663 LRRRSFNVSTS--ISSAVFLFVSTSGQRSVRAATSSKVLSTLGDHLRSDWSNPGWQYLPP 490
           L +R F  S S  I+++ +L  S    R + A+   + L    +     W+ PGW   P 
Sbjct: 134 LEQRRFRSSESRPITTSNYLAESVDRHREMEASRLREYLKAKENEANQPWNKPGWPG-PK 192

Query: 489 RNPSS 475
           +N  S
Sbjct: 193 KNDES 197


>U42841-3|AAK77638.1|  663|Caenorhabditis elegans Gex interacting
           protein protein16, isoform a protein.
          Length = 663

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = -2

Query: 663 LRRRSFNVSTS--ISSAVFLFVSTSGQRSVRAATSSKVLSTLGDHLRSDWSNPGWQYLPP 490
           L +R F  S S  I+++ +L  S    R + A+   + L    +     W+ PGW   P 
Sbjct: 134 LEQRRFRSSESRPITTSNYLAESVDRHREMEASRLREYLKAKENEANQPWNKPGWPG-PK 192

Query: 489 RNPSS 475
           +N  S
Sbjct: 193 KNDES 197


>U42841-2|AAK77639.1|  603|Caenorhabditis elegans Gex interacting
           protein protein16, isoform b protein.
          Length = 603

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = -2

Query: 663 LRRRSFNVSTS--ISSAVFLFVSTSGQRSVRAATSSKVLSTLGDHLRSDWSNPGWQYLPP 490
           L +R F  S S  I+++ +L  S    R + A+   + L    +     W+ PGW   P 
Sbjct: 134 LEQRRFRSSESRPITTSNYLAESVDRHREMEASRLREYLKAKENEANQPWNKPGWPG-PK 192

Query: 489 RNPSS 475
           +N  S
Sbjct: 193 KNDES 197


>U42841-1|AAM97958.1|  716|Caenorhabditis elegans Gex interacting
           protein protein16, isoform j protein.
          Length = 716

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = -2

Query: 663 LRRRSFNVSTS--ISSAVFLFVSTSGQRSVRAATSSKVLSTLGDHLRSDWSNPGWQYLPP 490
           L +R F  S S  I+++ +L  S    R + A+   + L    +     W+ PGW   P 
Sbjct: 187 LEQRRFRSSESRPITTSNYLAESVDRHREMEASRLREYLKAKENEANQPWNKPGWPG-PK 245

Query: 489 RNPSS 475
           +N  S
Sbjct: 246 KNDES 250


>AC024200-1|AAF35996.1|  196|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.11 protein.
          Length = 196

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 22/64 (34%), Positives = 30/64 (46%)
 Frame = -2

Query: 651 SFNVSTSISSAVFLFVSTSGQRSVRAATSSKVLSTLGDHLRSDWSNPGWQYLPPRNPSSP 472
           S ++S S+S ++ L   +S Q S+R    S V     D L    S P     PP N S+P
Sbjct: 54  SLSLSLSLSLSLSLSHLSSIQCSIRVRVHSPVPRDPRDRLHVSASPPRLALSPPLNFSAP 113

Query: 471 PVWL 460
            V L
Sbjct: 114 SVSL 117


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,166,573
Number of Sequences: 27780
Number of extensions: 352301
Number of successful extensions: 1160
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1160
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)