Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31196
         (670 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.28 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   1.5  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   4.6  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   6.1  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   8.0  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 559 SLEHSWGPSQVGLVESGMAVSTTTQPIK 476
           +L+ + G S +G + + M  STTT P K
Sbjct: 616 NLQAALGDSNMGFLNNSMCTSTTTSPDK 643


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 312 AEKRTLASSPRRSYFYYHSSSQTTIGSSQ 398
           AEKR  +    +   YY +S  T IG+SQ
Sbjct: 774 AEKREKSEHCEKGKEYYAASFHTDIGNSQ 802


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 618 VFLFVSTSGQRSVRAATSSKVL 553
           VFLF   SG  S+R  T+S  L
Sbjct: 16  VFLFDKCSGYPSIRQGTTSYCL 37


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 353 VAPPR*RSQCPLLRGPVSKRSQ 288
           V PPR ++ CPL   P   +SQ
Sbjct: 338 VEPPRRKNNCPLHCKPELGQSQ 359


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -1

Query: 520 VESGMAVSTTTQPIKSSGV 464
           + SG+++S +T+P  S G+
Sbjct: 542 LSSGLSISDSTKPETSKGI 560


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,386
Number of Sequences: 438
Number of extensions: 4131
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)