Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31194
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3...    30   0.28 
SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5 |Schizosac...    29   0.85 
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    28   1.5  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   2.6  
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po...    27   3.4  
SPBC8D2.15 |||mitochondrial lipoic acid synthetase |Schizosaccha...    26   4.5  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.0  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    26   6.0  
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2...    26   6.0  
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      25   7.9  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    25   7.9  

>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 449

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
 Frame = +1

Query: 469 AITIGDVKSNLQINLFGREVGPAVNNFL-EKIPVYLTDYAAE--VSRVLEYVAQLVINRY 639
           AITIGD  + L  +   +++GP V +F  + +P +LT ++       + + + Q V  R+
Sbjct: 178 AITIGDNSTLLYTSWLFQKIGPPVLSFSDDDVPGFLTHFSLSNYQQHLYQVLTQNVSLRF 237

Query: 640 CKLLE 654
           C  L+
Sbjct: 238 CSRLQ 242


>SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = -3

Query: 435 EGDGSASLSNDVLKCKSSGSERPQD-----AAENADFSFSRTD 322
           EG     LSND L+   S +  P D     + ENAD+SFS  D
Sbjct: 153 EGYTYPKLSNDNLEVDHSNTNEPADENKNQSIENADYSFSPED 195


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +1

Query: 460 IGAAITIGDVKSNLQINLFGREVGPAVNNFLEKIPVYLTDYAAE-VSRVLEYVAQLV 627
           + AAIT    K  +  + F +E G  V    E+I   + DY AE  S++LE   QL+
Sbjct: 94  VNAAITYCKDKDTIDESEFDKETGVGVVLTPEQIEQLVGDYVAENKSKILEQRYQLL 150


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 498 PPNQSLRTRSWTSRQQLPREDPCLPDGLRSRGQPCSGVRRP 620
           PP  S+   S  S   +P + P +P  L    QP + V+ P
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSP 184


>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 449

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/47 (23%), Positives = 25/47 (53%)
 Frame = -3

Query: 462 DVTDNDVVCEGDGSASLSNDVLKCKSSGSERPQDAAENADFSFSRTD 322
           +  DN ++     S S + D +  +  G+E+ +D  EN + + +R++
Sbjct: 325 NAVDNKILLIAMSSGSEALDAILAQMGGTEKVEDVLENVNDTLARSE 371


>SPBC8D2.15 |||mitochondrial lipoic acid synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +2

Query: 605 WSTSPNSSSTDTVNYSNDTCESKIKLCSLK 694
           W     S +T T+    DTC    + CS+K
Sbjct: 112 WGGKDKSRATATIMLMGDTCTRGCRFCSVK 141


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 22/56 (39%), Positives = 26/56 (46%)
 Frame = -3

Query: 444 VVCEGDGSASLSNDVLKCKSSGSERPQDAAENADFSFSRTD*C*NSGNSQD*VESG 277
           VV E D   +LS   LK  ++G      +AEN     S T    NSG S D V SG
Sbjct: 817 VVQEEDQRDTLS---LKTSTTGLSSHSKSAENNSTQQSTTSPSINSGASADAVSSG 869


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = -3

Query: 489 DIANSYCSSDVTDNDVVCEGDGSASLSND-VLKCKSSGSERPQD 361
           +    Y S  +TD  + C   G++ L+ND   KC S     P +
Sbjct: 33  EFLEGYLSGTITDVSLECSDVGTSILANDRSYKCTSVPETAPHE 76


>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 803

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
 Frame = -3

Query: 630 DDELGDVLQNTADLGCVVRQVDRDLL*EVVDGWSNFASEEIDL--EVRFDIANSYCSSDV 457
           +DEL +VL +      V+ ++D + L E  D     A        ++   +  ++ ++  
Sbjct: 479 EDELSNVLVSIPSRTSVLERLDTNPLNESTDAVVGCAQLYYPSLGKILISLTRNWQTTVF 538

Query: 456 TDNDVVCEGDGSASLSNDVLKCKSSGS 376
            D+D+   G    SLSN++   KS G+
Sbjct: 539 DDSDLATMGVNKESLSNEMDYSKSLGT 565


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 144 ERISRSQQFTDFIEQV*DHDVKDA 73
           E +SR QQF D +  +   ++KDA
Sbjct: 63  EEVSRRQQFVDKLRTILSTEIKDA 86


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +1

Query: 511  LFGREVGPAVNNFLEKIPVYLTDYAAEVSRVLEYVAQLVIN 633
            +  R++GP V  F+ K+P  L +   ++  + + V +LV+N
Sbjct: 972  IHNRKMGPTVKKFISKLP--LLNINVDLLPLTKNVLRLVLN 1010


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,384,520
Number of Sequences: 5004
Number of extensions: 41592
Number of successful extensions: 156
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)