Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31194
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0820 + 23437811-23440230,23440336-23440534                       28   6.2  
05_04_0307 + 20066169-20066410,20066803-20066858,20067490-200675...    28   6.2  
05_03_0478 - 14526180-14526578                                         28   6.2  

>12_02_0820 + 23437811-23440230,23440336-23440534
          Length = 872

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = -3

Query: 627 DELGDVLQNTADLGC-VVRQVDRDLL*EVVDGWSNFASEEIDLEVRFDIANSYCSSDVTD 451
           D+L   +Q+  ++    VR  +  +  + ++ WS+   EEI      DI + Y S    D
Sbjct: 252 DKLATYMQDIFNITAKAVRGDEESVALQAIEFWSSICDEEI------DILDEYSSEFTAD 305

Query: 450 NDVVC 436
           +DV C
Sbjct: 306 SDVPC 310


>05_04_0307 +
           20066169-20066410,20066803-20066858,20067490-20067581,
           20068400-20068502,20068623-20068760,20068898-20069148
          Length = 293

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 43  RDVDFEPNSQRILDIVISNLFNEIGELLRAAD 138
           RDV+  PN + + D+   N  +E+ ELL+ AD
Sbjct: 219 RDVELSPNPEEVADVKYVNR-DELKELLKKAD 249


>05_03_0478 - 14526180-14526578
          Length = 132

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/38 (44%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
 Frame = +3

Query: 525 SWTSRQQLPREDPCLPDGLRS---RGQPCSGVRRPTRH 629
           SW  RQ+   ED    DG R    RGQ     RRP RH
Sbjct: 54  SWARRQRRDEEDHRQHDGYRGARRRGQEDHRRRRPRRH 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,405,088
Number of Sequences: 37544
Number of extensions: 304726
Number of successful extensions: 992
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)