Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31194
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-4|CAB61010.2|  426|Caenorhabditis elegans Hypothetical pr...    31   0.60 
AF143297-1|AAD33902.1|  426|Caenorhabditis elegans tubby homolog...    31   0.60 
Z81101-7|CAB03200.1|  613|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z70752-6|CAA94759.1|  613|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z46381-3|CAA86516.1|  354|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z82275-3|CAL44962.1|  478|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z82265-8|CAB05169.2|  478|Caenorhabditis elegans Hypothetical pr...    28   5.6  
U58738-2|AAQ81271.1|  357|Caenorhabditis elegans Apex-related ge...    28   5.6  
Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical pr...    28   7.4  
L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome cond...    28   7.4  
AC006769-9|AAF60585.2|  779|Caenorhabditis elegans Hypothetical ...    28   7.4  
AC006645-2|AAF39844.2|  796|Caenorhabditis elegans Hypothetical ...    28   7.4  

>Z48334-4|CAB61010.2|  426|Caenorhabditis elegans Hypothetical
           protein F10B5.4 protein.
          Length = 426

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 169 WSPPRASDIINFSGRVTDVKADDFSSLHLRSVSYV 273
           W+    S ++NF GRVT     +F  +H  S  Y+
Sbjct: 352 WNDETQSYVLNFHGRVTQASVKNFQIIHQSSPEYI 386


>AF143297-1|AAD33902.1|  426|Caenorhabditis elegans tubby homolog
           protein.
          Length = 426

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 169 WSPPRASDIINFSGRVTDVKADDFSSLHLRSVSYV 273
           W+    S ++NF GRVT     +F  +H  S  Y+
Sbjct: 352 WNDETQSYVLNFHGRVTQASVKNFQIIHQSSPEYI 386


>Z81101-7|CAB03200.1|  613|Caenorhabditis elegans Hypothetical
           protein F25B3.6 protein.
          Length = 613

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -3

Query: 459 VTDNDVVCEGDGSASLSNDVLKCKSSGSERP--QDAAENADF 340
           V +++ V E +G  +  N ++KC++ GSERP       NADF
Sbjct: 308 VEESNKVYELEGKKT--NKIIKCQNGGSERPFRMQFVSNADF 347


>Z70752-6|CAA94759.1|  613|Caenorhabditis elegans Hypothetical
           protein F25B3.6 protein.
          Length = 613

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -3

Query: 459 VTDNDVVCEGDGSASLSNDVLKCKSSGSERP--QDAAENADF 340
           V +++ V E +G  +  N ++KC++ GSERP       NADF
Sbjct: 308 VEESNKVYELEGKKT--NKIIKCQNGGSERPFRMQFVSNADF 347


>Z46381-3|CAA86516.1|  354|Caenorhabditis elegans Hypothetical
           protein M01F1.3 protein.
          Length = 354

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 605 WSTSPNSSSTDTVNYSNDTCESKIKLCSLK 694
           W  S +S +T T+    DTC    K CS+K
Sbjct: 103 WGGSDDSLATATIMLMGDTCTRGCKFCSVK 132


>Z82275-3|CAL44962.1|  478|Caenorhabditis elegans Hypothetical
           protein F02H6.2 protein.
          Length = 478

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = -3

Query: 573 QVDRDLL*EVVDGWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEG 430
           Q +RD   EV+D    F  EE+D EV  D    +   +  D D   EG
Sbjct: 28  QAERDGWNEVIDNVGEFEDEEVDEEV--DEEEDHAEDEERDTDDEVEG 73


>Z82265-8|CAB05169.2|  478|Caenorhabditis elegans Hypothetical
           protein F02H6.2 protein.
          Length = 478

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = -3

Query: 573 QVDRDLL*EVVDGWSNFASEEIDLEVRFDIANSYCSSDVTDNDVVCEG 430
           Q +RD   EV+D    F  EE+D EV  D    +   +  D D   EG
Sbjct: 28  QAERDGWNEVIDNVGEFEDEEVDEEV--DEEEDHAEDEERDTDDEVEG 73


>U58738-2|AAQ81271.1|  357|Caenorhabditis elegans Apex-related genes
           protein 1, isoforma protein.
          Length = 357

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +2

Query: 596 AVFWSTSPNSSSTDTVNYSNDTCESKIKLCS 688
           A+ W  S N      V +  D C S IK CS
Sbjct: 149 ALHWECSTNGVRQCAVGWYGDDCSSNIKFCS 179


>Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical protein
            R13G10.1 protein.
          Length = 1469

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 10   LALACVSAV-PHRDVDFEPNSQRILDIVISNLFNEIGELLRAADPLRRD 153
            L   C+S + PHR+   E  ++ + D V  +  N+I +L +  D  RR+
Sbjct: 1090 LPYECISMIEPHREAYEEHEARMLEDDVFEDTANKICKLEKDVDKFRRE 1138


>L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome
            condensation protein protein.
          Length = 1469

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 10   LALACVSAV-PHRDVDFEPNSQRILDIVISNLFNEIGELLRAADPLRRD 153
            L   C+S + PHR+   E  ++ + D V  +  N+I +L +  D  RR+
Sbjct: 1090 LPYECISMIEPHREAYEEHEARMLEDDVFEDTANKICKLEKDVDKFRRE 1138


>AC006769-9|AAF60585.2|  779|Caenorhabditis elegans Hypothetical
           protein Y45G12C.11 protein.
          Length = 779

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 157 YAGSWSPPRASDIINFSGRVTDV 225
           + GSW P   SD INF+  +T +
Sbjct: 511 FCGSWYPDEFSDDINFTSTITPI 533


>AC006645-2|AAF39844.2|  796|Caenorhabditis elegans Hypothetical
           protein F56A4.6 protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 157 YAGSWSPPRASDIINFSGRVTDV 225
           + GSW P   SD INF+  +T +
Sbjct: 528 FCGSWYPDEFSDDINFTSTITPI 550


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,455,164
Number of Sequences: 27780
Number of extensions: 243956
Number of successful extensions: 733
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)