Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31192
         (565 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0487 - 18663890-18663964,18664286-18664441,18664693-186652...    28   5.9  
03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776     28   5.9  

>07_03_0487 -
           18663890-18663964,18664286-18664441,18664693-18665295,
           18665566-18665894,18665992-18666504,18667128-18667242,
           18667326-18667397,18667480-18667644,18668604-18668752,
           18668830-18668899,18668975-18669121,18669199-18669267,
           18669366-18669416,18669537-18669629,18670122-18670211
          Length = 898

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 509 SVTVTLVGEFTGLKPDDVANTNPSKSRASQNLPTD 405
           S T  LVG+ T    DD++    +++ + +N+P D
Sbjct: 560 STTANLVGQITTTCTDDISVNRSAENSSQKNIPLD 594


>03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776
          Length = 429

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +2

Query: 131 PP*CTCIPTSIXRHDTRTLSSWPPVTTFP 217
           PP     PT + +H  RT  SWPP TT P
Sbjct: 330 PPPPPLPPTPVAQHK-RTEFSWPPKTTAP 357


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,669,179
Number of Sequences: 37544
Number of extensions: 246869
Number of successful extensions: 645
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)