Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31192
         (565 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL034392-5|CAE17989.1|  134|Caenorhabditis elegans Hypothetical ...    28   5.3  
Z81468-1|CAB03875.3| 1010|Caenorhabditis elegans Hypothetical pr...    27   7.0  

>AL034392-5|CAE17989.1|  134|Caenorhabditis elegans Hypothetical
           protein Y40B1A.5 protein.
          Length = 134

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 220 PADRMESSRRRPKHVISDPPDP 285
           P     ++RRR +HV+S PP P
Sbjct: 4   PVVEFTTARRRKRHVVSTPPPP 25


>Z81468-1|CAB03875.3| 1010|Caenorhabditis elegans Hypothetical protein
            C13B4.1a protein.
          Length = 1010

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 21/66 (31%), Positives = 27/66 (40%)
 Frame = -2

Query: 396  RPTEKIRRETQWAVSES*FTRRALRPTGA*ST*KXR*WIGRIRNDVFGATSTAFHSVRRI 217
            RPT K   ET WA+     +  + R   A    K R W+ R R  V       F +V  I
Sbjct: 944  RPTSKTESETTWAIQSPPTSTDSNREVPA---EKKRLWVNRFREFVVYGAVLIFIAVGTI 1000

Query: 216  GNVVTG 199
             +V  G
Sbjct: 1001 LSVFFG 1006


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,624,571
Number of Sequences: 27780
Number of extensions: 204778
Number of successful extensions: 491
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)