Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31190
         (367 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    26   1.6  
SPAC56F8.11 |spc3||signal peptidase subunit Spc3 |Schizosaccharo...    24   6.4  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    24   6.4  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    24   6.4  

>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +2

Query: 29  WLNSMLVFHHISPLPPLLHYHLISHNFNHL 118
           W +       ++P   L HY L+SH   HL
Sbjct: 663 WSDCKYEIQRLTPASELSHYQLLSHIVTHL 692


>SPAC56F8.11 |spc3||signal peptidase subunit Spc3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 185

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 330 QLSTTLFFVCLAISF 286
           +LST LFF+C  I+F
Sbjct: 16  KLSTVLFFLCAVITF 30


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 8/33 (24%), Positives = 18/33 (54%)
 Frame = +2

Query: 38  SMLVFHHISPLPPLLHYHLISHNFNHLRLFNCH 136
           S++++ H S    L  +  I+  ++H  L +C+
Sbjct: 866 SLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCY 898


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 213 PFKKTVYILFINSDKARQQSLSNI 284
           PF K +  LF  SDK  +Q  SN+
Sbjct: 167 PFYKLIPTLFAQSDKNIRQEASNL 190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,285,094
Number of Sequences: 5004
Number of extensions: 19976
Number of successful extensions: 50
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)