Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31190
         (367 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0382 + 20796567-20796810,20796894-20797750                       27   4.5  
07_01_0241 - 1754866-1755174,1755547-1755570                           27   6.0  
01_01_0052 - 391398-391691,392243-392647                               26   7.9  

>05_04_0382 + 20796567-20796810,20796894-20797750
          Length = 366

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 56  HISPLPPLLHYHLISHNFNHLR 121
           H    PP  H+HL+ H+ +H +
Sbjct: 162 HAGYAPPASHHHLLQHHLHHFQ 183


>07_01_0241 - 1754866-1755174,1755547-1755570
          Length = 110

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 26  GWLNSMLVFHHISPLPPLLHYH 91
           GW NS+++     PLP L H H
Sbjct: 42  GWPNSIVMAQSSGPLPTLTHSH 63


>01_01_0052 - 391398-391691,392243-392647
          Length = 232

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +2

Query: 56  HISPLPPLLHYHLISHNFNHLR-LFNCHP 139
           +I P  PL H+H   HN +H + L  C P
Sbjct: 191 YIPPPHPLHHHHHQHHNHHHQQSLLRCFP 219


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,917,958
Number of Sequences: 37544
Number of extensions: 118400
Number of successful extensions: 324
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)