Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31189
(550 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo... 31 0.085
SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch... 29 0.60
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 1.0
SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa... 27 2.4
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 4.2
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos... 26 4.2
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 25 7.3
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ... 25 7.3
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch... 25 7.3
SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||... 25 9.7
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.7
>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
Sir2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 31.5 bits (68), Expect = 0.085
Identities = 19/51 (37%), Positives = 31/51 (60%)
Frame = +2
Query: 308 IALPSKLEELKDVIRREIRKELKIKEGAEKLREVPTDRRSLSDVANIVKKA 460
I LPS LEE +D+ + KE+ +E A +++ +P + DV N++KKA
Sbjct: 108 INLPSALEEFEDIDLLPLLKEVLKREVARRIK-LP-HFNTFEDVVNLLKKA 156
>SPBC1773.08c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 391
Score = 28.7 bits (61), Expect = 0.60
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Frame = +2
Query: 128 FVNTRSSSSEIFLHNYGYLTLHRASS---IMADPGYYHSDY-IRHPVLHELGVKYGIKTE 295
F T ++ + +G H ++ + + +Y D RH +H G G E
Sbjct: 302 FFRTMDATGGFWTERWGDAPFHSLAAGLFLSKEQVHYFRDLGYRHSDIHHCGQSLGCNCE 361
Query: 296 CIPEIA 313
CIPE++
Sbjct: 362 CIPELS 367
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.9 bits (59), Expect = 1.0
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = -2
Query: 450 TILATSDRDLRSVGTSRSFSAPSFILSSFRISLRMTSL-SSSNFDGNAISGIHSVLIPYL 274
TI ++S TS + S+ S SSF +L +S+ SSS+F + S ++
Sbjct: 289 TISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSS 348
Query: 273 TPSS 262
+PSS
Sbjct: 349 SPSS 352
>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 26.6 bits (56), Expect = 2.4
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 201 PQLWQTQVIIIVIIFDTQFFTNLVSS 278
PQ W T+V+IIV+I +F +L+ S
Sbjct: 43 PQHWITRVVIIVLIVLAWYFFSLLLS 68
>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 386
Score = 25.8 bits (54), Expect = 4.2
Identities = 15/49 (30%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Frame = +2
Query: 326 LEELKDVIRREIRKELKIKEGAEKL-REVPTDRRSLSDVANIVKKANIK 469
L+E ++++R ++KE K+K E+L E T++ +++ AN + K+ +K
Sbjct: 207 LDENGEILKRLVKKEKKLKNDNERLENEHRTEKLNVN--ANSLGKSFVK 253
>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
Plc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 899
Score = 25.8 bits (54), Expect = 4.2
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = -2
Query: 456 FLTILATSDRDLRSVGTSRSFSAPSFILSSFRISLRMTSLSSSNFDG 316
F +L++ DRD S RS S LSSF +S + TS S + F G
Sbjct: 62 FFKMLSSRDRDAHSTLRKRSNS-----LSSF-LSTKSTSASENKFHG 102
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 25.0 bits (52), Expect = 7.3
Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 2/93 (2%)
Frame = +2
Query: 218 PGYYHSDYIRHPVLHELGVKYGIKTECIPEIALPSKLEELKDVIRREIRKELKIKEGAEK 397
P Y S +IR V+ E+G + +I L + K R E K L + K
Sbjct: 783 PNVYSSLFIREGVVQEVGFLVRSTNADMKKIKLSISFSQNKSAARHEELKNLSTLKSLAK 842
Query: 398 --LREVPTDRRSLSDVANIVKKANIKLNELKSD 490
L + S + + + + L+E K D
Sbjct: 843 EFLSNYKEENLENSTLVQLKQLSKHLLSETKQD 875
>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 571
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/49 (22%), Positives = 23/49 (46%)
Frame = +3
Query: 102 EVYRTSAKPL*IPEALVVRFSYIIMVI*HYTVHPQLWQTQVIIIVIIFD 248
++Y KP ++ R ++ + +HP L +T I++ + FD
Sbjct: 463 QIYSEQHKPASFKRRVLRRIKQLLFSVTPVALHPFLQKTSSILVDLYFD 511
>SPBC4F6.09 |str1||siderophore-iron transporter Str1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -1
Query: 412 RYLTKFLGTFLYFKFFSYFSTYDIFELL*FRRQCYF 305
RYLT+ ++ YFS + +F + F+ +CY+
Sbjct: 82 RYLTEHSSRISFY--ICYFSIFLLFFAISFQAECYY 115
>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 525
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 424 SPICRYLTKFLGTFLYFKFFSYFSTYDIF 338
S IC +L KF + Y KFF++ Y +F
Sbjct: 337 SAICDWL-KF-SRYHYLKFFTFVEAYSVF 363
>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 491
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -2
Query: 390 APSFILSSFRISLRMTSLSSSNFD 319
+PS + SSF +S++ T LS + FD
Sbjct: 419 SPSPMHSSFTVSIKPTQLSENVFD 442
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,188,794
Number of Sequences: 5004
Number of extensions: 44650
Number of successful extensions: 131
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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