Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31189
         (550 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    24   1.2  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   6.2  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   6.2  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   8.2  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   8.2  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.2  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 265 FVKNWVSNIITMIITW 218
           FV  +V NIIT I+ W
Sbjct: 44  FVTGFVGNIITCIVIW 59


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -2

Query: 417 SVGTSRSFSAPSFILSSFRISLRMTSLSSSNF 322
           SVG S   S P F +   R      SL++ N+
Sbjct: 176 SVGVSNEVSLPQFKVLGHRQRAMEISLTTGNY 207


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -2

Query: 417 SVGTSRSFSAPSFILSSFRISLRMTSLSSSNF 322
           SVG S   S P F +   R      SL++ N+
Sbjct: 115 SVGVSNEVSLPQFKVLGHRQRAMEISLTTGNY 146


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +2

Query: 173 YGYLTLHRASSIMADPGYYHSDYIRHPVLHELGVK 277
           YG+   H    I + P    S   +  VL  LGV+
Sbjct: 804 YGHQQSHHGLHINSSPSSVQSGQQQQSVLQGLGVQ 838


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = +3

Query: 504 NRSSYYLVDNQHQHH 548
           N    Y +DN H HH
Sbjct: 269 NYGGVYHLDNHHVHH 283


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 372 SSFRISLRMTSLSSSNFDG 316
           SSF  S+  TSL S N+ G
Sbjct: 97  SSFFSSVSPTSLGSENYTG 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,127
Number of Sequences: 438
Number of extensions: 3132
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)