Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31184
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    34   0.022
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    29   0.63 
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    29   0.63 
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual       27   1.9  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    27   1.9  
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr...    26   4.4  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    26   5.9  
SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|...    25   7.8  

>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 230

 Score = 33.9 bits (74), Expect = 0.022
 Identities = 20/50 (40%), Positives = 27/50 (54%)
 Frame = -3

Query: 398 LPRNCSQAVVRSSSSFMILHWATPVTVSGTPWAVSTYSHIGFNVITSRDI 249
           L R  S +   SSSS    H + P T S +P + ST S  G +VIT+ D+
Sbjct: 48  LYRRASTSSSSSSSSISTSHDSQPSTSSSSPSSTSTSSSSGTSVITASDV 97


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +3

Query: 333 RPVQDHERRRTSHNCLRAVPGQDRQRD-*DDCPANVGGSFASYSRN 467
           +PV +H+ ++TS      VPG  R +D   DCP++    F   S N
Sbjct: 218 QPVSEHKEKQTSFLRRFRVPGFSRDKDKTKDCPSSNSNPFHLASSN 263



 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -2

Query: 468 SSENSSQMTLQRLQDSHLNLFDG 400
           S++NSS  + Q + DS++N+F G
Sbjct: 137 SNQNSSLKSFQSVPDSNVNVFGG 159


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 128 MLPILNPFTVTFTIHTLHFTTKTITNLFNLPKN 30
           +L + NP + +  +H    TT  I NLFN+P N
Sbjct: 734 LLNLENPISGSQGLHYKRLTTDMIHNLFNVPSN 766


>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -3

Query: 266 ITSRDIRWTSVTRHQAHAHPPTMVRFVVGPKQPPETISASLGPTV 132
           +T ++  WTS T H   A      R+++  + P E IS ++G TV
Sbjct: 299 LTKQEKGWTSATEHTGSADQIIKDRYILAIEDPFE-ISHNVGRTV 342


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 31/129 (24%), Positives = 54/129 (41%)
 Frame = -3

Query: 680 SVSQSYTNVSVLFTLAVCDFPKLARYWTSS*TSLIVKDRISIPILPTSGAATSRTKPANW 501
           S +   T+ SV  + A+ D    +   +SS         +S   L +S ++ S +   N 
Sbjct: 493 STATEATDTSVQTSSAIYDSSSTSNIQSSSSVYASSTGALSSNSLSSSTSSVSTSYIPNA 552

Query: 500 SLSLYTSSTVRVPRIARK*PSNVCRTVILISLTVLPRNCSQAVVRSSSSFMILHWATPVT 321
           S S+Y SST  +        +++  +    S + +P   S   V S+SS       + +T
Sbjct: 553 SSSVYASSTEALS------SNSLSSSTSSASTSYIPSASSSYEVASNSSDYYSQTVSSIT 606

Query: 320 VSGTPWAVS 294
            SGT  + S
Sbjct: 607 ASGTTSSTS 615


>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -3

Query: 515 KPANWSLSLYTSSTVRVPRIARK*PSNVCRTV--ILISLTVLPRNCSQAVV 369
           +P +  L L+TS T   P++      N+CR++  I  S  + PR+ S  V+
Sbjct: 159 QPDDVMLVLHTSGTTGRPKVVPLTHKNLCRSIHNITTSYRLDPRDTSYVVM 209


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 963

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 4/91 (4%)
 Frame = +3

Query: 417  DDCPANVGGSFASYSR----NSYSRRGVQRQGPIRGLGTRSGCAGRRKNGNRDSVLHD*G 584
            +D P   GG    Y+R    N     G Q   PI      +     +  G+RDSV+ + G
Sbjct: 785  NDFPPIFGGHSNVYNRQQPGNVSGMSGTQTSNPINNATANTSGMTEKAAGHRDSVIGNGG 844

Query: 585  RLRRCPVSGQLGEVADGQREEDADVGVALAN 677
                  +S  LG ++       A  G+ + N
Sbjct: 845  VTGANSMSSTLGGLSSMSGMGRAAPGMFMGN 875


>SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 270

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -3

Query: 581 LIVKDRISIPILPTS 537
           LIV DR+ +PILPT+
Sbjct: 37  LIVIDRVELPILPTT 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,954,412
Number of Sequences: 5004
Number of extensions: 65780
Number of successful extensions: 217
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)