Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31182
         (363 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle position...    29   1.3  
AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane...    29   1.3  
AF003389-7|AAC71133.1|   96|Caenorhabditis elegans Bmp receptor ...    27   4.0  
Z92803-2|CAB07241.1|  175|Caenorhabditis elegans Hypothetical pr...    26   9.3  
Z81478-2|CAB03933.1|  195|Caenorhabditis elegans Hypothetical pr...    26   9.3  
U39645-3|AAA80362.3|  439|Caenorhabditis elegans Gustatory recep...    26   9.3  
AF387605-1|AAK70488.1|  427|Caenorhabditis elegans putative chem...    26   9.3  
AF123574-1|AAD21197.1|  175|Caenorhabditis elegans chromo-domain...    26   9.3  

>L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle positioning
            protein 4 protein.
          Length = 2104

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 171  CQPTSLQCCAPLWNCIHCCYIRRCKNIRTGLPQLLASQVPG 293
            C+   L  C+P   CI   Y+ +C+ IR  +   +   +PG
Sbjct: 1673 CEKPELNECSPHARCIDLDYLYKCECIRPYVNSAVGDALPG 1713


>AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane
            matrix receptor MUP-4 protein.
          Length = 2104

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 171  CQPTSLQCCAPLWNCIHCCYIRRCKNIRTGLPQLLASQVPG 293
            C+   L  C+P   CI   Y+ +C+ IR  +   +   +PG
Sbjct: 1673 CEKPELNECSPHARCIDLDYLYKCECIRPYVNSAVGDALPG 1713


>AF003389-7|AAC71133.1|   96|Caenorhabditis elegans Bmp receptor
           associated proteinfamily protein 2 protein.
          Length = 96

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 61  SRFFQQTVRRYHGESHFKPP-TMDELPVPKGSWQSHHDANQRRFNAVL 201
           SRF Q+     H  ++  PP T D +PVP  S++  +   Q +FN  L
Sbjct: 13  SRFAQKRHGHGHHVANPGPPCTFDLMPVPFQSYKKVYGELQGKFNTYL 60


>Z92803-2|CAB07241.1|  175|Caenorhabditis elegans Hypothetical
           protein K01G5.2a protein.
          Length = 175

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +1

Query: 28  TIKMFVTRQIASRFFQQTVRRYHGESHFKPPTMDEL 135
           T ++   +++ SR+  Q +R Y  +   + P  DEL
Sbjct: 140 TARLLPAKEVNSRYPSQVIRYYESKLTIQDPKADEL 175


>Z81478-2|CAB03933.1|  195|Caenorhabditis elegans Hypothetical
           protein C31G12.2 protein.
          Length = 195

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 126 HGGGLEVTFAMVATHCLLEESRCNLACYEHFYC 28
           + GGLE+   +  T+  L + RC+ A +  + C
Sbjct: 158 NAGGLEICATVEITYVSLADQRCDRADFNGYAC 190


>U39645-3|AAA80362.3|  439|Caenorhabditis elegans Gustatory receptor
           family protein 2 protein.
          Length = 439

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
 Frame = +1

Query: 55  IASRFFQQ--TVRRY--HGESHFKPPTMDELPVPKGSWQSHHDAN---QRRFN 192
           +A  F+Q    +RR   H  +   P   DE P+P+ S Q  HD     QR FN
Sbjct: 228 LAILFYQHCSVIRRSIKHLINEMVPAEQDECPLPESSLQKIHDCQISYQRIFN 280


>AF387605-1|AAK70488.1|  427|Caenorhabditis elegans putative
           chemoreceptor GUR-2 protein.
          Length = 427

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
 Frame = +1

Query: 55  IASRFFQQ--TVRRY--HGESHFKPPTMDELPVPKGSWQSHHDAN---QRRFN 192
           +A  F+Q    +RR   H  +   P   DE P+P+ S Q  HD     QR FN
Sbjct: 216 LAILFYQHCSVIRRSIKHLINEMVPAEQDECPLPESSLQKIHDCQISYQRIFN 268


>AF123574-1|AAD21197.1|  175|Caenorhabditis elegans chromo-domain
           protein protein.
          Length = 175

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +1

Query: 28  TIKMFVTRQIASRFFQQTVRRYHGESHFKPPTMDEL 135
           T ++   +++ SR+  Q +R Y  +   + P  DEL
Sbjct: 140 TARLLPAKEVNSRYPSQVIRYYESKLTIQDPKADEL 175


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,764,060
Number of Sequences: 27780
Number of extensions: 136773
Number of successful extensions: 374
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)