Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31179
         (556 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    26   4.3  
SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyc...    25   5.7  
SPBC577.03c |||GCN5-related N-acetyltransferase |Schizosaccharom...    25   7.5  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    25   7.5  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    25   9.9  

>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
 Frame = -1

Query: 412 VRYLPNN*IVPTLSKNSIVLLI----DPIHPP 329
           +RY P+N +   LSK  I+ ++    DP+ PP
Sbjct: 184 IRYTPSNQMGQALSKQRIIKMVTAEQDPMEPP 215


>SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 147 LHYFVGKNNTVKCGNLDTF*VQHCFLSFLNFHL*C 251
           L  F  K+N +  G + T   Q CF+S ++ H  C
Sbjct: 325 LFEFQDKHNLLTLGWIHTHPTQTCFMSSVDLHTHC 359


>SPBC577.03c |||GCN5-related N-acetyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +3

Query: 159 VGKNNTVKCGNLDTF*VQHCFLSFLNFHL*CIKILFKKNNHKKLQKLTC 305
           + +N TV CGNL     Q C +  L +H       + KN  ++LQ+LTC
Sbjct: 3   INQNTTVDCGNLILVPYQKCHV--LKYH------NWMKN--EELQELTC 41


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -2

Query: 225 IKNNVELKKCPNSHILRYCFCQRSSVKIKFRPLIMIP 115
           I +N +   C N + L Y  C R+   +K    I IP
Sbjct: 860 ITHNSKFNSCCNIYRLGYSMCMRAQAYLKRMKDIFIP 896


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 216 CFLSFLNFHL*CIKILFKKNNHKKLQKLT 302
           CF   ++ H  C+K LF ++ H+K    T
Sbjct: 725 CFHCSISCHSRCLKRLFAESEHEKTMSET 753


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,066,390
Number of Sequences: 5004
Number of extensions: 38829
Number of successful extensions: 77
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)