Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31179
         (556 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0047 - 11867302-11867356,11867461-11868032,11868485-118688...    31   0.47 
08_02_0598 - 19149218-19149524,19150325-19150896,19151374-191517...    29   2.5  
03_05_0858 + 28309266-28311143                                         28   4.4  
05_07_0209 + 28420008-28421510                                         28   5.8  

>09_03_0047 -
           11867302-11867356,11867461-11868032,11868485-11868873,
           11869018-11869331,11871028-11871382,11872004-11872076
          Length = 585

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 123 MIPLHTDYSESLGHFCADCLIYVNRYRG 40
           +IP HT+ +ESL  FC D +I +  Y G
Sbjct: 496 LIPKHTNDTESLEQFCRDTVITIWHYHG 523


>08_02_0598 -
           19149218-19149524,19150325-19150896,19151374-19151762,
           19151850-19152163,19152312-19152356,19153451-19153805,
           19154361-19154430
          Length = 683

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 123 MIPLHTDYSESLGHFCADCLIYVNRYRG 40
           +IP HT+ S S+  FC D ++ +  Y G
Sbjct: 510 LIPKHTNDSTSMEQFCRDTVVTIWHYHG 537


>03_05_0858 + 28309266-28311143
          Length = 625

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +1

Query: 40  PSISINIYETVSAKVP*AFTIVSVEGYHNEGSELNFYTTSL 162
           P     +  TV A  P   T+V  E  HN GS L+ +T SL
Sbjct: 456 PGALEKVLGTVHAVRPRIVTVVEQEANHNSGSFLDRFTESL 496


>05_07_0209 + 28420008-28421510
          Length = 500

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +1

Query: 31  AFHPSISINIYETVSAKVP*AFTIVSVEGYHNEGSELNFYTTSL 162
           A  P+    + + V++  P  FT+V  E  HN+ S L  +T SL
Sbjct: 296 ASFPAPIDGVLDWVASMNPRVFTVVEQEADHNKSSLLERFTNSL 339


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,110,985
Number of Sequences: 37544
Number of extensions: 203732
Number of successful extensions: 336
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)