Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31179
         (556 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82095-2|CAB05027.2|  602|Caenorhabditis elegans Hypothetical pr...    31   0.42 
AF067945-1|AAC17679.1|  312|Caenorhabditis elegans Serpentine re...    29   3.0  
AF024503-8|AAG24090.2|  283|Caenorhabditis elegans Hypothetical ...    28   5.2  
U97012-12|AAK39146.1|  310|Caenorhabditis elegans Serpentine rec...    27   6.9  
U39676-3|AAB37032.2|  941|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AL110495-1|CAB60408.1|  268|Caenorhabditis elegans Hypothetical ...    27   9.1  

>Z82095-2|CAB05027.2|  602|Caenorhabditis elegans Hypothetical
           protein ZK849.4 protein.
          Length = 602

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +1

Query: 103 VSVEGYHNEGSELNFYTTSLAKTIP*NVGIWTLFKFNIVF-YRF*IFIYNALRYCLKRI 276
           VS E  HN  S ++++  SL K+I     IW +    I+F YR  + I+    YC K I
Sbjct: 22  VSTESIHNFVSIMSYWHGSLVKSIWKEYAIWIVLYHLILFIYRVVMPIFGWADYCKKVI 80


>AF067945-1|AAC17679.1|  312|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 31 protein.
          Length = 312

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = +2

Query: 146 FTLLRWQKQYRKMWEFGHFLSSTLFF---IVFKFSFIMH 253
           FTL+   K+Y ++W +G ++   L F   I+F +  ++H
Sbjct: 115 FTLIFMPKRYFQIWHYGTYILIALIFITPILFTYPLLVH 153


>AF024503-8|AAG24090.2|  283|Caenorhabditis elegans Hypothetical
           protein F31F4.11 protein.
          Length = 283

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +3

Query: 219 FLSFLNFHL*CIKILFKKNNHKKLQKLTCPYSPRL 323
           F+ FL     C+ I+F    HKK   L  PY P L
Sbjct: 11  FIKFLIAWATCVVIIFCCWTHKKTDLLAIPYPPAL 45


>U97012-12|AAK39146.1|  310|Caenorhabditis elegans Serpentine
           receptor, class sx protein18 protein.
          Length = 310

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 421 INFLISLMSYKTLMTKLSYLIFVNT 495
           IN +++   YK+L TKL  LI ++T
Sbjct: 27  INLIVATCRYKSLRTKLGCLIMIST 51


>U39676-3|AAB37032.2|  941|Caenorhabditis elegans Hypothetical
           protein C23F12.2 protein.
          Length = 941

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -1

Query: 385 VPTLSKNSIVLLIDPIHPPPHSLGE 311
           VPT S +SIV ++ PI PPP +L +
Sbjct: 574 VPTQS-SSIVQVVQPIPPPPPTLAQ 597


>AL110495-1|CAB60408.1|  268|Caenorhabditis elegans Hypothetical
           protein Y60A9.1 protein.
          Length = 268

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 243 NENLKTIKNNVELKKCPNSHILR 175
           N NL+ +K+   LKK PN  ++R
Sbjct: 206 NSNLRKVKSESNLKKLPNDTLMR 228


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,169,623
Number of Sequences: 27780
Number of extensions: 205138
Number of successful extensions: 390
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)