Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31177
         (410 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1317 - 36251231-36251341,36252514-36252609,36252879-362529...    28   3.3  
11_05_0069 - 18814789-18815326,18815742-18816001,18816077-188166...    27   5.8  
08_02_1418 - 26931896-26932339,26932435-26932668,26932805-269331...    27   5.8  
09_04_0680 - 19401891-19402049,19402556-19402928,19403385-194034...    27   7.7  
09_02_0207 - 5793848-5794276,5794523-5794645,5794742-5795250,579...    27   7.7  
01_01_1220 + 9862195-9862281,9862427-9862646,9862764-9862916,986...    27   7.7  

>01_06_1317 -
           36251231-36251341,36252514-36252609,36252879-36252956,
           36253037-36253138,36254509-36254784
          Length = 220

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 58  IYTLRRGGDFCDWTHKFFGPGNFKIFHMFIGFA 156
           I+ ++R    C W +   G  N+KIF +F+ +A
Sbjct: 86  IHEIKRKDHHCIWINNCVGHENYKIFLVFVLYA 118


>11_05_0069 -
           18814789-18815326,18815742-18816001,18816077-18816631,
           18816907-18817062
          Length = 502

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +1

Query: 88  CDWTHKFFGPGNFKIFHMFIGFARCVC-FVF 177
           C W  +  G  N++ F MFI     +C +VF
Sbjct: 228 CPWVGQCIGKRNYRFFFMFISSTTFLCLYVF 258


>08_02_1418 -
           26931896-26932339,26932435-26932668,26932805-26933110,
           26933462-26933644,26934386-26934493
          Length = 424

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +1

Query: 88  CDWTHKFFGPGNFKIFHMFIGFARCVC-FVF 177
           C W  +  G  N++ F MF+     +C +VF
Sbjct: 190 CPWVGQCIGKRNYRFFFMFVSSTTLLCVYVF 220


>09_04_0680 -
           19401891-19402049,19402556-19402928,19403385-19403421,
           19403587-19403667,19405215-19405280,19407453-19407948,
           19408050-19408283,19408473-19408772,19409241-19409423,
           19410412-19410414
          Length = 643

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +1

Query: 88  CDWTHKFFGPGNFKIFHMFIGFARCVC-FVF 177
           C W  +  G  N++ F+MF+     +C +VF
Sbjct: 153 CPWVGQCIGRRNYRFFYMFVFSTTLLCLYVF 183


>09_02_0207 -
           5793848-5794276,5794523-5794645,5794742-5795250,
           5795543-5795648,5795798-5795959,5796094-5796144,
           5796229-5796394,5796624-5797093
          Length = 671

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 21/71 (29%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
 Frame = -3

Query: 336 EQVHS-SV*LFHSEIRNELTERTCRRMSYAYVSRCYGDRSVSVNLXXXXXXXXIKHETHA 160
           E VH  S+    S+  N  T  T R+   A V    GD  +  +            ET +
Sbjct: 383 ETVHQVSLMQLQSKNHNTPTHNTYRQSLSASVDSSPGDFEIRFSPNGSEYGLEKTKETKS 442

Query: 159 TRKTNEHMKNF 127
             KTN H  NF
Sbjct: 443 ENKTNVHATNF 453


>01_01_1220 + 9862195-9862281,9862427-9862646,9862764-9862916,
            9863016-9863674,9863749-9863852,9863950-9864192,
            9864262-9864376,9864696-9864909,9864995-9865511,
            9866439-9866448,9867363-9867551,9867755-9868084,
            9868639-9868872,9869303-9869743
          Length = 1171

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 67   LRRGGDFCDWTHKFFGPGNFKIFHMFIGFARCVC-FVF 177
            +R+    C W  +  G  N++ F +FI  +  +C +VF
Sbjct: 931  VRKFDHHCPWVGQCIGLRNYRFFFLFISTSTLLCVYVF 968


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,971,318
Number of Sequences: 37544
Number of extensions: 144087
Number of successful extensions: 284
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 284
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)