Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31177
         (410 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024753-1|AAF60456.1|  732|Caenorhabditis elegans Hypothetical ...    27   4.0  
AC084197-4|AAO38575.1|  335|Caenorhabditis elegans Serpentine re...    27   5.3  
U40798-4|AAA81474.2|  430|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z81486-5|CAB03987.1|  570|Caenorhabditis elegans Hypothetical pr...    26   9.2  
U41026-6|AAA82353.1| 1081|Caenorhabditis elegans Hypothetical pr...    26   9.2  

>AC024753-1|AAF60456.1|  732|Caenorhabditis elegans Hypothetical
           protein Y23H5B.6 protein.
          Length = 732

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 144 EHMKNFKISRTKKFMRPITKVSSSPQCIYVKL 49
           E + N  IS+TK   + +TKVS++ + +  KL
Sbjct: 579 EKISNITISKTKPLKKAVTKVSAAKKILNKKL 610


>AC084197-4|AAO38575.1|  335|Caenorhabditis elegans Serpentine
           receptor, class v protein27 protein.
          Length = 335

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +3

Query: 273 FVRLVHF*FQNETIKRTNAPVRSVVYVILYVPCAILKFYSLKRIII 410
           F+R  +F +Q   I    A   +++YV LY+ C  +   SL+R ++
Sbjct: 76  FIRQFYFDYQEYYIA---AATYNIIYVSLYIRCTGIILLSLQRYLV 118


>U40798-4|AAA81474.2|  430|Caenorhabditis elegans Hypothetical
           protein R13A1.3 protein.
          Length = 430

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = +1

Query: 46  QKLDIYTLRRGGDFCDWTHKFFGPGNFKIFHMFI 147
           +++D+YT   G D+  W        +   FH +I
Sbjct: 264 EEIDVYTFLDGNDYSSWIRAAIIGSSLLFFHSYI 297


>Z81486-5|CAB03987.1|  570|Caenorhabditis elegans Hypothetical
           protein C53A5.6 protein.
          Length = 570

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 77  EETFVIGRINFLVLEILKFF 136
           EE F I  IN+ VLE++K F
Sbjct: 51  EEAFAITTINYQVLELIKHF 70


>U41026-6|AAA82353.1| 1081|Caenorhabditis elegans Hypothetical
           protein C28G1.4 protein.
          Length = 1081

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = -3

Query: 159 TRKTNEHMKNFKISRTKKFMRPITKVSSSPQ 67
           T+++ EH K+F I ++ +  +P  K++ + Q
Sbjct: 163 TKRSEEHTKDFGIRQSNRQRKPTAKLAETAQ 193


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,258,597
Number of Sequences: 27780
Number of extensions: 143159
Number of successful extensions: 319
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)