Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31176
(725 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom... 43 4e-05
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 30 0.39
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 28 1.6
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa... 27 3.6
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 27 3.6
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.8
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 26 6.3
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 25 8.3
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop... 25 8.3
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 25 8.3
>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 43.2 bits (97), Expect = 4e-05
Identities = 30/103 (29%), Positives = 42/103 (40%), Gaps = 3/103 (2%)
Frame = +2
Query: 53 KPIIAAVNGFALGGGCELAMLCDIIYAGEKAKFGQPEINIGTIPGAGGT---QRLPRYVG 223
KP++A +NG +GGG LAM A E F PE IG + RLP Y G
Sbjct: 153 KPVVALMNGITMGGGSGLAMHVPFRIACEDTMFAMPETGIGYFTDVAASFFFSRLPGYFG 212
Query: 224 KSKAMEIVLTGNFFDAHEAEKMGLVSKVFPVEKLLEETIKLAE 352
+ LT ++ + G+ + P +LAE
Sbjct: 213 ----TYLGLTSQIVKGYDCLRTGIATHFVPKHMFPHLEDRLAE 251
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 29.9 bits (64), Expect = 0.39
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 141 RRNSVNPRSTLAPSPEPEAPSVFPDTLASRK 233
RR+S + RS + EPE PS+ + +AS K
Sbjct: 10 RRSSTSKRSVIDDDSEPELPSMTKEAIASHK 40
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 605 VSEIKWEX*YWL*LLYIDKKNRAKSFLHWNKRIYF*KKKK 724
VS+ KW L ++ K + +L+WN + Y KKK+
Sbjct: 163 VSDTKW-------LEFVSAKGQCPKYLYWNNKSYLLKKKR 195
>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 26.6 bits (56), Expect = 3.6
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -2
Query: 589 KTFSPT*KT*K*RKDLFIFEIRWSLFNKCCHTFFAVLRSKGSIEGGLL 446
KTFSP K + L I +I W + + CC ++F + SI L
Sbjct: 9 KTFSPYYGLNKVEQKLLI-KIDWFILSYCCVSYFINYLDRSSINNAYL 55
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +3
Query: 135 AKRRNSVNPRSTLAPSPEPEAPSVFP 212
AK + V P AP EP PS+ P
Sbjct: 290 AKSKKKVTPAPAPAPESEPSKPSIAP 315
>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 391
Score = 26.2 bits (55), Expect = 4.8
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 132 PAKRRNSVNPRSTLAPSPEPEAP 200
P K +N+++ + L PSPE +AP
Sbjct: 154 PGKEKNTLDLKHCLLPSPEYKAP 176
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 120 SHSIASSQPPPRAKPLTAAMMGFPQLEMSS 31
S+S SS P A+PLTA +GF + S
Sbjct: 268 SNSAQSSLFSPTARPLTARKLGFASSQTKS 297
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 25.4 bits (53), Expect = 8.3
Identities = 18/67 (26%), Positives = 29/67 (43%)
Frame = +3
Query: 105 WQCCAISSMPAKRRNSVNPRSTLAPSPEPEAPSVFPDTLASRKQWRSC*QETSLMLMKPR 284
+Q + S P RN++ P +T +PSV P+T+ S + S +K +
Sbjct: 357 FQSSSNSPAPYVYRNNLPPSATSFQPSSSRSPSVDPNTVKSAQHIPRMSPSPSASALKTQ 416
Query: 285 KWVLSVK 305
V S K
Sbjct: 417 SHVPSAK 423
>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
pyrophosphate phosphatase fusion 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 25.4 bits (53), Expect = 8.3
Identities = 21/56 (37%), Positives = 23/56 (41%), Gaps = 7/56 (12%)
Frame = +2
Query: 74 NGF-ALG---GGC---ELAMLCDIIYAGEKAKFGQPEINIGTIPGAGGTQRLPRYV 220
NGF ALG GG LA CD G P I TIPG T + + V
Sbjct: 98 NGFYALGLSQGGLFLRALAQTCDAAKIRSLITLGSPHSGINTIPGCSPTNLICKAV 153
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 160 RDQHWHHPRSRRHPASSQIRWQVESNGDRV 249
RD + RSR+ ++ R++ E NGD+V
Sbjct: 56 RDSEYFRGRSRKFQIQAEGRFKKEYNGDQV 85
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,362,931
Number of Sequences: 5004
Number of extensions: 77409
Number of successful extensions: 199
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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