Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31175
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces p... 119 4e-28
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy... 31 0.18
SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1 |Schi... 29 0.54
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 26 6.6
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 26 6.6
SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr... 25 8.7
SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharo... 25 8.7
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 25 8.7
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa... 25 8.7
>SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 119 bits (287), Expect = 4e-28
Identities = 56/231 (24%), Positives = 124/231 (53%), Gaps = 4/231 (1%)
Frame = +1
Query: 70 TEYWVISAPG-DKTCQQTWDTLNNATKSGN---LSVNYKFPIPDLKVGTLDQLVGLSDDL 237
+++W++S P + D + SG+ +S F +P KV +LD L+ S+ L
Sbjct: 4 SDFWILSVPSRGGSNADLCDDIERLLVSGSTSLISTVAPFDVPPFKVESLDVLISQSEQL 63
Query: 238 GKLDTFVEGVTRKVAQYLGEVLEDQRDKLHENLMANNSDLPTYLTRFQWDMAKYPIKQSL 417
K D K++ + + L + M + Y++ F W+ +++ + +++
Sbjct: 64 TKQDAQCASAISKISDIIKNTVSSSSGDLKDYFMVQDKSPLEYVSSFAWNSSRFHMNKTI 123
Query: 418 RNIADIISKQVGQIDADLKVKSSAYNALKGNLHNLEKKQTGSLLTRNLADLVKKEHFILD 597
I+D I+ ++ + D++ + +++ N++KKQ+G+L ++LA++V +E +
Sbjct: 124 SEISDRITSEIISFENDIRTRQTSFQQASSAFQNMQKKQSGNLSQKSLANIVHEEDVVHG 183
Query: 598 SEYLTTLLVIVPKSMFNDWNANYEKITDMIVPRSTQLVHQDNDYGLFTVTL 750
S+YLT + + VP ++ + +YE +TD+++PRS + + QD+++ L+TV +
Sbjct: 184 SDYLTNVFIAVPLNLEKQFLNSYETLTDLVIPRSAKKLDQDSEFVLYTVVV 234
>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 523
Score = 31.1 bits (67), Expect = 0.18
Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 3/88 (3%)
Frame = +1
Query: 484 SAYNALKGNLHNLEKKQTGSLLTRNLADLVKKEHFILDSEYLTTLLVIVPKSMFNDWNAN 663
S ++ L + H +E K L L + + +Y LL I K ND+ A
Sbjct: 194 SKFSKLGPSEHEIEVKHFAKEFESILRYLYLDTNAVFTKQYNNALLSIGKKFQLNDFIAL 253
Query: 664 YEKITDMIVPR---STQLVHQDNDYGLF 738
YEK + + R QL ND G F
Sbjct: 254 YEKDREQLHSRDWKKIQLAKTQNDLGEF 281
>SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 342
Score = 29.5 bits (63), Expect = 0.54
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = +1
Query: 406 KQSLRNIADIISKQVGQIDADLKVKSSAYNALKGNLHNLEKKQTGSLLTRNLADLVKKE 582
K +NIA + V +I D V+ N +KG L K+ + NL D+ K+E
Sbjct: 218 KNKQQNIAGVQGTMVTKIGYDELVRQGDSNLMKGTGTKLNGKEVAEVPKINLLDVEKQE 276
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +3
Query: 639 DVQRLERQLREDNGHDRA--ALHSASPPGQRLRTLHRH 746
D+QR + +LRED DR + + LR++ RH
Sbjct: 1411 DIQRSDSKLREDQSRDRTPQSRSFTNENNDNLRSVSRH 1448
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 271 RKVAQYLGEVLEDQRDKLHENLMAN 345
+KVAQ L E+L DQR L + +AN
Sbjct: 921 KKVAQRLTELLSDQRVHLPSSKIAN 945
>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 454
Score = 25.4 bits (53), Expect = 8.7
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = +1
Query: 166 NYKFPIPDLKVGTLDQLVGLSD--DLGKLDTFVEGVTRKVAQYLGEVLEDQRDKLHENLM 339
N FP+ LK Q+ SD + GKL +G+ +K +Y + + D L
Sbjct: 68 NEFFPLLSLKKEITLQIERCSDPNERGKLVNEAKGLKKKTEEYNKIISKVTNDLYQYCLA 127
Query: 340 ANNSDLPT 363
N+ LPT
Sbjct: 128 VPNTTLPT 135
>SPAC24C9.12c |||glycine hydroxymethyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 25.4 bits (53), Expect = 8.7
Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Frame = -3
Query: 424 YSADSALWGT*-PCPIGSESNKWVGHCYWPSSFHGAYRADLQVPLQGTGLPSWSHLRRKY 248
++ D A WG C GS +N V P HG L G LPS HL Y
Sbjct: 90 FNLDPAKWGVNVQCLSGSPANMQVYQAIMPP--HGR--------LMGLDLPSGGHLSHGY 139
Query: 247 QACPDHLTAPPT 212
Q ++A T
Sbjct: 140 QTDTKKISAVST 151
>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 506
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = -2
Query: 716 WWTS*VERGTIMSVIFS*LAFQSLNIDLGTMTRSVVRYSLSKMKCSF 576
W S RGT ++ + + ++ +DL T T++ V Y+ ++ SF
Sbjct: 220 WLASKTARGTSCALSSAVASNLAIGLDLVTATQNAVSYTQRALEMSF 266
>SPAC32A11.03c |phx1||homeobox transcription factor
Phx1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 25.4 bits (53), Expect = 8.7
Identities = 23/73 (31%), Positives = 34/73 (46%)
Frame = -2
Query: 272 LVTPSTKVSSLPRSSDSPTN*SKVPTLRSGIGNL*LTLRLPDLVALFRVSQVC*QVLSPG 93
L PS V SLPR+S+SP+ P + + + D+ A F SQ +
Sbjct: 734 LSAPSD-VGSLPRASNSPSRPVMHPNTQG------INTEIKDMAAQFPNSQTGGLTPNSW 786
Query: 92 ALITQYSVIFTTR 54
++ T SV FTT+
Sbjct: 787 SMNTNVSVPFTTQ 799
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.133 0.384
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,909,328
Number of Sequences: 5004
Number of extensions: 60037
Number of successful extensions: 194
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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