Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31174
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc...    27   3.5  
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    27   3.5  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    27   3.5  
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    26   4.6  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      26   4.6  

>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 152 FRCIPLFKCNRQVESV 199
           F+CIPLFK N + E +
Sbjct: 256 FKCIPLFKNNEEAEKI 271


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 290 IRDLPKNFFXXXXXXXXXXSDNEIHKLPADIQNFENLVELDVSRN 424
           +R++  + F          + N + +LP +I   +NLV LD S N
Sbjct: 170 LRNVSTDLFKFSFLTELYINHNNLTRLPPEIGKLKNLVILDASGN 214


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +2

Query: 284 NHIRDLPKNFFXXXXXXXXXXSDNEIHKLPADIQNFENLVELDVSRN 424
           N I+ LP++F           S N + +LP  I +  NL  L +  N
Sbjct: 108 NKIKQLPESFGALMNLKVLSISKNRLFELPTYIAHMPNLEILKIENN 154


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 10/42 (23%), Positives = 23/42 (54%)
 Frame = +2

Query: 482 RIKIIMYQSPDHKNCILTRQNYYKSKNMKEIKLKKFNIYLNN 607
           +IK++  ++P+H   I     YY +    + +L+K  +++ N
Sbjct: 3   KIKLLNVKTPNHYTIIFKVVAYYSALQPNQNELRKKELFIKN 44


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +3

Query: 6   VRAAVLEKNIVSQWYSLSQNSIILLKCSNMYR 101
           VRA +L KN+ S + S  ++ + ++K  ++YR
Sbjct: 576 VRAFLLRKNLESIYDSFQKSHLSVIKAQSLYR 607


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,724,776
Number of Sequences: 5004
Number of extensions: 55142
Number of successful extensions: 163
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)