Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31174
(712 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0515 - 24483282-24483478,24486451-24486927,24486949-24489580 32 0.52
08_02_1221 - 25371247-25371387,25371472-25372385,25372675-25373350 32 0.52
07_03_1476 + 26798812-26798838,26799162-26799237,26799322-268000... 31 0.68
11_08_0011 + 27612206-27615110,27615211-27615538,27615989-276160... 30 1.6
04_04_0238 + 23839763-23840251,23841389-23841555,23841632-23842280 30 2.1
12_01_0185 + 1366715-1366882,1366985-1367039,1368563-1368753,136... 29 2.8
01_07_0111 - 41137822-41138973,41139453-41139540,41139850-411399... 29 3.6
11_06_0551 + 24903208-24903399,24903513-24904661,24904686-24907502 29 4.8
11_06_0541 + 24771145-24775479 29 4.8
02_04_0447 + 22998353-22999033,22999665-22999831,22999965-23000622 29 4.8
11_08_0026 + 27752519-27755441,27755538-27755923 28 6.4
10_08_0332 - 16843295-16843356,16843884-16846656 28 6.4
10_08_0331 - 16831646-16834756 28 6.4
01_07_0356 + 43009360-43009671,43010203-43010419,43010527-43011011 28 6.4
>11_06_0515 - 24483282-24483478,24486451-24486927,24486949-24489580
Length = 1101
Score = 31.9 bits (69), Expect = 0.52
Identities = 18/75 (24%), Positives = 29/75 (38%)
Frame = +2
Query: 206 RHCSLPTVPEDIXXXXXXXXXXXXDANHIRDLPKNFFXXXXXXXXXXSDNEIHKLPADIQ 385
R C + +P+++ +A IR LP F S +I +P+ I
Sbjct: 559 RQCEIKQIPQELCQTLRHLEVLSLEATKIRKLPNKFDLLFHLTFLNLSGTDIRVIPSSIS 618
Query: 386 NFENLVELDVSRNGK 430
+ L L +S GK
Sbjct: 619 KLQLLHTLKLSYCGK 633
>08_02_1221 - 25371247-25371387,25371472-25372385,25372675-25373350
Length = 576
Score = 31.9 bits (69), Expect = 0.52
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +2
Query: 281 ANHIRDLPKNFFXXXXXXXXXXSDNEIHKLPADIQNFENLVELDVSRNG 427
AN I LP++ N++ LP+ I NL ELDV NG
Sbjct: 305 ANRISQLPESIGDLRSLIYLNMRGNQLSSLPSSIGRLLNLEELDVGSNG 353
>07_03_1476 +
26798812-26798838,26799162-26799237,26799322-26800055,
26800397-26800546,26800659-26801042
Length = 456
Score = 31.5 bits (68), Expect = 0.68
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = -2
Query: 243 KMSSGTVGNEQCRLSTLSTWRLHLNKGIHRNMLNTTLHINYNRIKHYND 97
K+ +G C ++ LS + +HL+ IHR + + ++Y ++H +D
Sbjct: 133 KVFAGAFPRVICCITRLSLYNVHLDGDIHRILFDCCTQLDYLNLEHCDD 181
>11_08_0011 +
27612206-27615110,27615211-27615538,27615989-27616059,
27616962-27617118,27617676-27617709
Length = 1164
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 299 LPKNFFXXXXXXXXXXSDNEIH-KLPADIQNFENLVELDVSRN 424
LP +F SDN++ +P I ENL+ELD+S N
Sbjct: 484 LPPSFSNLTGLRVIELSDNQLQGAIPESIMEMENLLELDLSGN 526
>04_04_0238 + 23839763-23840251,23841389-23841555,23841632-23842280
Length = 434
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +2
Query: 290 IRDLPKNFFXXXXXXXXXXSDNEIHKLPADIQNFENLVELDVSRN 424
++DLP +F S+N+IH LP + + L +L++ +N
Sbjct: 303 LKDLPASFGDLLNLRELDLSNNQIHALPDNFGRLDKLEKLNLEQN 347
>12_01_0185 +
1366715-1366882,1366985-1367039,1368563-1368753,
1369882-1369951,1370027-1370172,1370612-1370762,
1371228-1371346,1371482-1371553,1372546-1372649,
1373093-1373285,1373501-1373644,1373706-1373792,
1373967-1374065
Length = 532
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 222 GNEQCRLSTLSTWRLHLNKGIHRNMLNTTLHINYNRIKH 106
G+ +C TL T LH++ + R M +T + + I H
Sbjct: 22 GSSRCEAETLETASLHVDYSVARRMPDTLFGLFFEEINH 60
>01_07_0111 -
41137822-41138973,41139453-41139540,41139850-41139969,
41140165-41140211,41140796-41141029,41141305-41141505,
41141506-41143407,41144140-41145303,41145574-41145879
Length = 1737
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +2
Query: 290 IRDLPKNFFXXXXXXXXXXSDNEIHKLPADIQNFENLVELDVSRN 424
I LPK+F S+ + LPA+I + + L LD+SRN
Sbjct: 626 IISLPKSFHTLQNMQSLILSNCSLEILPANIGSLQKLCYLDLSRN 670
>11_06_0551 + 24903208-24903399,24903513-24904661,24904686-24907502
Length = 1385
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +3
Query: 24 EKNIVSQWYSLSQNSIILLKCS 89
+KN VSQWY L +NS+ L CS
Sbjct: 529 DKNYVSQWYGL-RNSLKQLSCS 549
>11_06_0541 + 24771145-24775479
Length = 1444
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +3
Query: 24 EKNIVSQWYSLSQNSIILLKCS 89
+KN VSQWY L +NS+ L CS
Sbjct: 587 DKNYVSQWYEL-RNSLEQLSCS 607
>02_04_0447 + 22998353-22999033,22999665-22999831,22999965-23000622
Length = 501
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +2
Query: 281 ANHIRDLPKNFFXXXXXXXXXXSDNEIHKLPADIQNFENLVELDVSRN 424
+N + LP + S N++ LP I +LVELDVS N
Sbjct: 246 SNALVSLPDSIGLLTSLKILDVSGNKLRSLPDSISKCRSLVELDVSYN 293
Score = 28.7 bits (61), Expect = 4.8
Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 2/98 (2%)
Frame = +2
Query: 137 VVFNMFRCIPLFKCN-RQVESVDKRHCSLPTVPEDIXXXXXXXXXXXX-DANHIRDLPKN 310
V N R +P C R + +D L +P I + + +RDLP +
Sbjct: 314 VHLNKLRSLPSSVCEMRSLRLLDAHFNQLRGLPAGIGRLAALESLNLSSNFSDMRDLPAS 373
Query: 311 FFXXXXXXXXXXSDNEIHKLPADIQNFENLVELDVSRN 424
F S+N+IH LP + L L + +N
Sbjct: 374 FGDLLGLRELDLSNNQIHALPDCFGRLQRLERLRLDQN 411
>11_08_0026 + 27752519-27755441,27755538-27755923
Length = 1102
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +2
Query: 347 SDNEIH-KLPADIQNFENLVELDVSRN 424
S+N++H +P I ENL++LD+S N
Sbjct: 504 SNNQLHGTIPESIMEMENLLQLDLSGN 530
>10_08_0332 - 16843295-16843356,16843884-16846656
Length = 944
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 347 SDNEIHKLPADIQNFENLVELDVSRN 424
S+N +P ++ ENLVELD+S N
Sbjct: 421 SNNLSGSIPVELGELENLVELDLSEN 446
>10_08_0331 - 16831646-16834756
Length = 1036
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 347 SDNEIHKLPADIQNFENLVELDVSRN 424
S+N +PA++ + ENL ELD+S N
Sbjct: 422 SNNLCGSIPAELGDLENLEELDLSNN 447
>01_07_0356 + 43009360-43009671,43010203-43010419,43010527-43011011
Length = 337
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 434 CTYHCVIHPILLNFQNSGYQLAVCVSHY 351
C+ C+ H ++ + SGY AVCVS +
Sbjct: 141 CSASCIRHLLVKLLRYSGYDAAVCVSKW 168
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,506,365
Number of Sequences: 37544
Number of extensions: 279415
Number of successful extensions: 803
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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