Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31169
         (567 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    27   1.9  
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   4.4  
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.7  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    25   7.7  
SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy...    25   7.7  
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    25   7.7  

>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +2

Query: 284 SNHKYRSPSSSNPSLATKSSASELTHRYSPLSFSPDLLGGS 406
           SN  +   +  +PS+   SS      R+SP S   DLL G+
Sbjct: 14  SNEFFGETTMVSPSIDVSSSPRPNVERFSPCSTKKDLLEGN 54


>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +2

Query: 308 SSSNPS-LATKSSASELTHRYSPLSFSPDLL 397
           S+S+PS + + SS S   + Y+PL FS DLL
Sbjct: 382 SASSPSYVPSGSSFSVRANLYNPLDFSIDLL 412


>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -1

Query: 480 QTGSVADTSPSKSRALQNLSPDRKHDPPRRSGEKLSGLYLWVNS 349
           Q+ SV  T PS+     N  P  ++DP  +S ++ +G Y   NS
Sbjct: 205 QSSSVPST-PSEVAMGHNFCPMSRNDPSLQSIQQTNGFYSGHNS 247


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +1

Query: 388 GSSRWVVFPIR*KILQSTALARASVSNTPGLSSVSSPT 501
           G   W V+     +LQ+T ++ +SVS+T   SS SSP+
Sbjct: 109 GDLYWSVYLTGNGVLQTT-VSSSSVSSTTSSSSSSSPS 145


>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 215

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = +2

Query: 284 SNHKYRSPSSSNPSLATKSSASELTHRYSPLSFSPDLLGGSCFRSGERFCKARLLL 451
           +N    S  SS+ +L T+ + S     +   +     L G+C     RFC A  L+
Sbjct: 125 TNPPLESEKSSDKALLTRPATSRRRCCHPTCTRITLRLAGNCLHCNGRFCAAHRLM 180


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 14/54 (25%), Positives = 23/54 (42%)
 Frame = -1

Query: 483 AQTGSVADTSPSKSRALQNLSPDRKHDPPRRSGEKLSGLYLWVNSLAELFVASD 322
           + T S   ++PS + +LQN  P     PP      +    L  +S   ++V  D
Sbjct: 154 SDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSALGTSSKTPVYVVVD 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,101,204
Number of Sequences: 5004
Number of extensions: 39576
Number of successful extensions: 134
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)