Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV31169
         (567 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   1.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.9  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   8.6  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   8.6  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   8.6  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 243 GFIMTCLGRRGQSRLSRPKILKTLYVLVLTV 151
           GF+MT L R GQS +    +L  + V V  +
Sbjct: 67  GFLMTFLRRYGQSAVGLTFLLGAILVQVAII 97


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +2

Query: 230  VIMNPPDPXXXXXXXXXFSNHKYRSPSSSNPS 325
            +  +PP P         F N  YR  SSSNPS
Sbjct: 1025 ITWSPPLPELRHGDIQGF-NVGYRETSSSNPS 1055


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +2

Query: 230  VIMNPPDPXXXXXXXXXFSNHKYRSPSSSNPS 325
            +  +PP P         F N  YR  SSSNPS
Sbjct: 1021 ITWSPPLPELRHGDIQGF-NVGYRETSSSNPS 1051


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 264 STVNGSGGFIMTCLGRRGQ 208
           ST+ GSGG  +  L +RGQ
Sbjct: 728 STLEGSGGDSLRTLLQRGQ 746


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -1

Query: 219 RRGQSRLSRPKILKTLYVLVLTVPVF 142
           RRG+ R    +I+ + Y+  +  PV+
Sbjct: 318 RRGRGRSREHRIIPSHYIEQIPAPVY 343


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 197 DKRLCPRRPKHVIMNPP 247
           D  LCP   KH I  PP
Sbjct: 451 DDGLCPYTLKHKIRVPP 467


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 452 GLVSATLPV*AP*AHL 499
           GLV+ T+PV AP  H+
Sbjct: 142 GLVNRTVPVCAPKLHV 157


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,122
Number of Sequences: 438
Number of extensions: 2666
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)