Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV31168
(619 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharom... 150 1e-37
SPBC902.05c |idh2|glu2|isocitrate dehydrogenase |Schizosaccharom... 103 2e-23
SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces ... 44 1e-05
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe... 33 0.044
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c... 27 2.2
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 3.8
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 25 6.6
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp... 25 6.6
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 25 6.6
SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomy... 25 8.8
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 25 8.8
SPAC22E12.03c |||THIJ/PFPI family peptidase |Schizosaccharomyces... 25 8.8
>SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 150 bits (364), Expect = 1e-37
Identities = 76/159 (47%), Positives = 104/159 (65%), Gaps = 4/159 (2%)
Frame = +1
Query: 142 VIRKQKLIPKAQYGGRHAVTMLPGGGIGPECMGYVRDIFKYIGAPIDFEVVDIDPTMDND 321
++RK +YGG++ VT++PG GIG E V +IFK PI+FE +D+ N+
Sbjct: 5 LVRKSSAFQPLKYGGKYTVTLIPGDGIGRETSNAVTEIFKTANVPIEFEEIDVTGMEKNN 64
Query: 322 ----DDVQYAITTIKRNGVGLKGNIETKSEAAYVTSRNVALRNELDMYAYILNCKSYPGV 489
D + AI ++KRN VGLKG + T E TS NVALR ELD+YA ++ K+ PG
Sbjct: 65 KSSGDALHEAIQSLKRNKVGLKGILFTPFEKGGHTSFNVALRKELDIYASLVLIKNIPGF 124
Query: 490 ATRHKDIDVVIIRQNTEGEYAMLEHESVNGVVESMKVVT 606
TRH ++D IIR+NTEGEY+ LEH+SV GVVES+K++T
Sbjct: 125 KTRHDNVDFAIIRENTEGEYSGLEHQSVPGVVESLKIIT 163
>SPBC902.05c |idh2|glu2|isocitrate dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 103 bits (247), Expect = 2e-23
Identities = 55/143 (38%), Positives = 84/143 (58%), Gaps = 2/143 (1%)
Frame = +1
Query: 184 GRHAVTMLPGGGIGPECMGYVRDIFKYIGAPIDFEVVDIDPTMDNDDDV--QYAITTIKR 357
G + VTM+ G GIGPE V IFK PI++E V + P + N A ++++
Sbjct: 44 GNYTVTMIAGDGIGPEIAQSVERIFKAAKVPIEWERVKVYPILKNGTTTIPDDAKESVRK 103
Query: 358 NGVGLKGNIETKSEAAYVTSRNVALRNELDMYAYILNCKSYPGVATRHKDIDVVIIRQNT 537
N V LKG + T +V S N+ LR ++A + C S G T + +++ V+IR+NT
Sbjct: 104 NKVALKGPLATPIGKGHV-SMNLTLRRTFGLFANVRPCVSITGYKTPYDNVNTVLIRENT 162
Query: 538 EGEYAMLEHESVNGVVESMKVVT 606
EGEY+ +EHE + GVV+S+K++T
Sbjct: 163 EGEYSGIEHEVIPGVVQSIKLIT 185
>SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 362
Score = 44.4 bits (100), Expect = 1e-05
Identities = 40/157 (25%), Positives = 79/157 (50%), Gaps = 13/157 (8%)
Frame = +1
Query: 187 RHAVTMLPGGGIGPECMGYVRDIFKYIGAP--IDFEVVDIDPTMDNDDDVQYAIT--TIK 354
R + ++P GIG E + R + + + A + F+ +D+D + A+ T++
Sbjct: 6 RIVLGLIPADGIGKEVVPAARRLMENLPAKHKLKFDFIDLDAGWGTFERTGKALPERTVE 65
Query: 355 RN----GVGLKGNIETKS-EAAYVTSRNVALRNELDMYAYILNCKSYPGVATRHKDIDVV 519
R L G +++ + + A +S VALR ++ +YA + KS G + K +D+V
Sbjct: 66 RLKTECNAALFGAVQSPTHKVAGYSSPIVALRKKMGLYANVRPVKSLDGA--KGKPVDLV 123
Query: 520 IIRQNTEGEYA----MLEHESVNGVVESMKVVTADNS 618
I+R+NTE Y M+++ V E+++ ++ + S
Sbjct: 124 IVRENTECLYVKEERMVQNTPGKRVAEAIRRISEEAS 160
>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 32.7 bits (71), Expect = 0.044
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +1
Query: 310 MDNDDDVQYAITTIKRNGVGLKGNIETKSEAAYVTSRNVALRNELDMYAYI 462
M +DD VQY I +K G+ L +++T E + + R + D+Y Y+
Sbjct: 685 MKHDDLVQYVINNVKDRGIPLVSDVKTAIEK--LLEKEYLEREDNDIYTYV 733
>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 581
Score = 27.1 bits (57), Expect = 2.2
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +1
Query: 358 NGVGLKGNIETKSEAAYVTSRNVA--LRNELDMYAYILNCKSYPGVATRHKDID 513
N VGL G + K A +T N+A L ++++ CK +P A K +D
Sbjct: 470 NVVGLAGAVGDKVPKAALTMNNIAYLLGIVTSFLSHLIICKIFPVTACGEKFLD 523
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 26.2 bits (55), Expect = 3.8
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -3
Query: 329 TSSSLSIVGSMSTTSKSIGAPMYLNMSRTYPMHSGPIPPPGSMVTA 192
TS + SI+ ++ T+ S +P S P P+PPP + TA
Sbjct: 816 TSQASSILPTVPRTT-SYTSPYATTSSHITPADVHPLPPPSTSTTA 860
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 25.4 bits (53), Expect = 6.6
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Frame = +1
Query: 433 RNELDMYAYILNCKSYPGVATRHKDIDVVIIRQNTEGE-----YAMLEHESVNGVVES 591
R+ELD + Y + SY + HK+ ++I ++ G+ Y M SV +++S
Sbjct: 136 RDELDPHLYAIAEDSYKCMNQEHKNQTIIISGESGAGKTVSARYIMRYFASVQALIQS 193
>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 382
Score = 25.4 bits (53), Expect = 6.6
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Frame = -3
Query: 392 LVSMLPFSPTPFLLMVV----IAYWTSSSLSIVGSMSTT 288
L ML P+PF ++ + YW SSL+I+G + ++
Sbjct: 38 LTKMLDPLPSPFTVLDASRAWMVYWELSSLAILGKLDSS 76
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 25.4 bits (53), Expect = 6.6
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -2
Query: 354 LNGRYSILDIIIIVHRWVNVHHFEVNRSTDVFEY 253
L+G+ S ++I+ + +W +VH +V R + Y
Sbjct: 356 LDGKSSKQELIMALQQWASVHGRQVTRPVLIASY 389
>SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 300
Score = 25.0 bits (52), Expect = 8.8
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = -1
Query: 421 YVMSHRLPHFWFQCCPLAPH 362
Y H+L H W C P A H
Sbjct: 146 YPRLHKLHHKWIICTPYASH 165
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 25.0 bits (52), Expect = 8.8
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +1
Query: 505 DIDVVIIRQNTEGEYAMLEHES-VNGVVESM 594
DID IR E E A++ H S GV +SM
Sbjct: 148 DIDAPCIRAGLEPEVALINHSSGSTGVPKSM 178
>SPAC22E12.03c |||THIJ/PFPI family peptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 191
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +1
Query: 148 RKQKLIPKAQ-YGGRHAVTMLPGGGIGPECM 237
R K IP A + ++ + ++PGGG+G + +
Sbjct: 56 RSYKEIPSADDFAKQYDIAIIPGGGLGAKTL 86
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.135 0.383
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,661,640
Number of Sequences: 5004
Number of extensions: 56260
Number of successful extensions: 181
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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